Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10965g00001 ATGATTGAACTCTCCACTCCCACCCATTTTCCCTCCTTTCTATATAATCCCTCCACACACATCTCTTCTCCACTTCATACTCACCCATTAACTCTCTCACAATACCTCATTCATTTCACCCAATCTCTCACCAAAATCCAATTATCTTCTCTCACAAGGCTTATCACGTTATTTGAGATGACGGCTGAAAAGGAGGATTTGGGTTTGAGTCTAAGCTTGAGCTTCCCTCACAACGCTCCAACTCCTCTTCATCTCATTCTTCTCTCCACTACTTCAACTTATTCTTCTTCTCCTTCAAGCCACAACCTTCACAAACCCTCTTGGAACGACCCTTTCGCTTCTTCAGGTGAAGCTGGATCGTTCCTCCGCGGAATCGATGTGAACCGGTTACCTTCTGCGGTTGATTGCGAAGAGGAAGCGGGTGTCTCGTCTCCAAACAGCACGGTTTCCAGCGTGAGCGAAAAGCGTAGCGAGAGGGAAGCCAATGGGGAAGAAGAGCACGACACAGACAGAGGTTGTTTCAGAGGCATCAGCGACGAAGAAGAAGGTGAAAATTGTAGAAAGAAACTTAGACTCTCCAAAGACCAATCCATTATTCTGGAAGAGAGTTTCAAAGAACACAGCACTCTTAACCCGAAACAAAAGTTGGCACTGGCGAAACAGTTGGGTCTTCGAGCAAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACGAAGCTGAAACAAACGGAGGTGGACTGCGAGTTTTTGAAGAGGTGCTGCGAGAATCTGACGGAGGAGAACAGAAGGTTGCAGAAGGAAGTGCAAGAGCTCAGAGCATTGAAACTTTCCCCACAGTTTTACATGCACATGACTCCACCCACCACTCTCACCATGTGTCCCTCTTGTGAGCGTGTCGCTGTTCCCCCTTCCGCTGCCGTTGATACCGCCGCGCGTCACCGTCACGTGCCCCAGACCCACTCTCGGGCCTTCCCCATTGGCCCATGGGCCACCTCTGCCGCTCCTATTTCACACAGGCCCTTCGATGCGCTCCGTCCCAGATCTTGA 1053 0.5005 MIELSTPTHFPSFLYNPSTHISSPLHTHPLTLSQYLIHFTQSLTKIQLSSLTRLITLFEMTAEKEDLGLSLSLSFPHNAPTPLHLILLSTTSTYSSSPSSHNLHKPSWNDPFASSGEAGSFLRGIDVNRLPSAVDCEEEAGVSSPNSTVSSVSEKRSEREANGEEEHDTDRGCFRGISDEEEGENCRKKLRLSKDQSIILEESFKEHSTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSAAVDTAARHRHVPQTHSRAFPIGPWATSAAPISHRPFDALRPRS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10965g00001 350 PRINTS Lambda-repressor HTH signature 214 223 IPR000047 GO:0003677
Vium10965g00001 350 PRINTS Lambda-repressor HTH signature 223 239 IPR000047 GO:0003677
Vium10965g00001 350 SMART halz 243 286 IPR003106 GO:0006355|GO:0043565
Vium10965g00001 350 Coils Coil 242 279 - -
Vium10965g00001 350 ProSiteProfiles 'Homeobox' domain profile. 183 243 IPR001356 GO:0003677
Vium10965g00001 350 Pfam Homeobox associated leucine zipper 243 277 IPR003106 GO:0006355|GO:0043565
Vium10965g00001 350 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 101 315 - -
Vium10965g00001 350 Pfam Homeodomain 187 241 IPR001356 GO:0003677
Vium10965g00001 350 SMART HOX_1 185 247 IPR001356 GO:0003677
Vium10965g00001 350 Pfam HD-ZIP protein N terminus 62 160 IPR006712 GO:0005634
Vium10965g00001 350 MobiDBLite consensus disorder prediction 136 177 - -
Vium10965g00001 350 MobiDBLite consensus disorder prediction 153 177 - -
Vium10965g00001 350 Gene3D - 191 241 - -
Vium10965g00001 350 ProSitePatterns 'Homeobox' domain signature. 218 241 IPR017970 GO:0000981|GO:0006355
Vium10965g00001 350 SUPERFAMILY Homeodomain-like 185 251 IPR009057 -
Vium10965g00001 350 CDD bZIP 236 275 - -
Vium10965g00001 350 CDD homeodomain 187 244 IPR001356 GO:0003677
Vium10965g00001 350 FunFam Homeobox-leucine zipper protein 18 176 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10965g00001 Vium-Chr10965 9224 11262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10965g00001 60 350 Homeobox Transcription Factor Family AT5G47370 60.197 4.59e-108 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium10965g00001 HD-ZIP_N 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10965g00001 K09338 - gmx:100783851 443.736