Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10935g00002 ATGCCTGTCCTTGAAACACTTGGTGGTGCTCTTTTTGGTGTTGTTCTTCAGATGCTATTTGACAAGCTCGATTCTCATCAAGTTTTGGGCTTCTTTCGTGGGAGAAATCTTGACGAGAAGCTACTGAAAAAGTTGAAGAGGAAGTTGATGGACATCAACGCTGTCATAGATGATGCAGAACAAAAGCAGTTCACTAATTCATTGGTCAAAGAGTGGCTTGATGAGGTTAGAGACGTCTTGTATGATGCAGAGGATCTGCTCGAGCAAATAGACTATGAATTCTCCAAGACTAAGTTGGAAGCTGAATTCCAGACCAGTTCTAGCAAGGTATACAGTTTTGAATCCAAGATCATAGCACTCCTAGACGATTTAGAATCTCTTTTAAACCACAAGATTGTTAAAGATTTCAAAATTTATAGTGGCGTAAGATCTGAGTTGGGTAATAAGGTGTCGGATAAAAAAGTCGAATCAACGTCGTTGGTGGCTGAAGAGGTAATTTATGGCAGAAATGAGGAAAAAGAAATGATCTTTACTTGGCTGAGATCTGACACTGACGATAATAAGCAGTCAATACTTTCTATTGTGGGTATGGGTGGGATGGGTAAGACCACACTTGCTCAACATGTATACAATGATCCAAAGACAGAGGAAGCTAAATTTGATGAAAAGGCTTGGGTTTGCGTTTCTGATGCATTTGATGCTTTGAGAGTATCCAAAGCAATTATTGGAGCTTTCACTAACTCAAGAGATGACAGTGATGACCTAGAAATGATTCATGGAAAATTTAAAAAAAGATTGTCCGGAAGGAAATTTCTTCTGGTTCTGGATGATGTTTGGAACGAAGACCGCAATCAATGGAAAGCATTACAAACTCCTCTTACGTTTGGAGCTAAAGGAAGTAAAATTCTAGTCACAACACGCAGTCACAAAGTTGCTTCTATCATGCAGTCAACCTACATACACCAATTAAAGCAATTAGATGAAGATCACAGCTGGCAAACTTTTGCTAAACATGCATTCCATGATCAAGACTCCGAGTTGAAGTCTGAGTTAAAGGAGATTGGTATGAAGATAGTTAAAAAGTGCCAAGGATTGCCTCTGGCCCTTGAAACAATAGGATGTCTTTTACAGTCAAAGTCATCCGTTTCAGAGTGGGAAGGTGTATTGACAAGCGAGATATGGGACTTACCAATAGAAGATAGTAAAATCGTCCCTACCTTGTTGTTGAGCTATTACCATCTTCCTTCTCATCTCAAGAGATGTTTTGCTTATTGTGCATTATTCCCCAAAGACCATAGGTTTGACAAAGAGAGCTTAATTTTGTTATGGATGGCTCAAAATTTTCTACATTGCTCTCAACAAAGCAAGTCTCCAGAAGAAGTAGGTGAAGACTACTTCAATGATCTAGTATCAAGGTCATTCTTTAAACAAATAACTTGGGACAAGGAAATATATTTTGTCATGCACGACCTTCTGAATGATTTAGCAAAATATGTTTCAGGTGAAATCTGCTACAGGTTAGGTGTTGATGGTGAAAAAGGAGTATCAAGGAAAACCCGTCATATATCATATGTAAGCGGTCTTAGTCAATGTTATACGAATTTATGTGATGCTAAAGGGTTACGGACATTTATAACCTTTCAGGGGTGGGACTGTCCGATGTCAATAGAAGAGTCAATCTCCAACTTTAAGTTCTTACTGGTCTTATCATGGCGTTGGTGTATTAAGGTGCCTGACACCATAGGCGATCTAATACATCTCCGTTCGTTAGACCTTTCAGGTGCCGACATAAAGAGACTTCCTGACTCAACCTGTTCACTCTATAACTTGCAAGAATTGAAACTAAATAATTGTTTCAAATTGAAGGAGCTGCCCTTGACTTTGCATGAGCTCACCAATTTGCGCCGCCTTGAACTTAAGGGAATTACTTTAACAAAGGTTCCACACCGTTTAGGAGAGTTGAAGAATCTTCACGTGTGGATAAACAAGTTTGCGGTTGAAAAAAGTAGTGAGTTCAGTATTCAACAATTAGGAGAACTTGATCTTCGTGCAGAGGAGCTGTCAATTAATAATCTTGAAAATATCGCAAATCCCTGTGAGACGAATTTGAAAAATAAAACACATATTGTGAGTCTGAGTTTACGATGGAATTTGAAGCGGAACAATGACGATTCAGTAAAAGAAAGAGAAGTACTTGAGAATCTGCAACCTTCCAGGCATTTGAAGCACTTGTCGATCGATGGCTATCTACAGATGATATCGCAGGAGCAACCTCATAATCATTTGAAGTATTTGTGGATTGAAGAATGCTCTGAATTTGAATCATTTCCTAACGAAGGATTATTTGCACCTCAGCTAGTGTCATTTAATATTAGAGGATTGAAAAAATTGAAGTCAATGCCTAAATGCATGTCTGCCCTTCTTCCATCTCTTAATCGTGTGGACATATTCTATTGTCCAGCGCTGGAGATGTCCGAGGGATATTTGCCATCAAATGTAAAAAAGATGTTTCTCGGGGATTGCTCCAAACTTGTGGCCTCACTCAAGGGCGCTTGGGGAACCAACCCTTCCTTAAAAATCCTTTACATTTGCAATGTGGATTTGGAGTGTTTTCCTGGTGAAGGTTTGCTCCCACTTTCTCTTGATCATCTAGAGATATATGATTGTCCAAATCTTAAAAAACTGCACTACAAGGGTCTCTGTCACCTCTCCTCTCTTCAGACATTGGTTCTTCGTGACTGTCCTATACTCCAATGCTTGCCTGAGGAGGGTCTACCCAAATCCATTTCAAAACTCGAAATTGTATATTGTCTGTTACTAAAACAGCGATGCAAGAAACAAGGTGAAGACTGGGAAAAGATTGCTCACATTAAATCCATATGCGTTGATTACGTAAATGAAAAACGTTTATAA 2913 0.391 MPVLETLGGALFGVVLQMLFDKLDSHQVLGFFRGRNLDEKLLKKLKRKLMDINAVIDDAEQKQFTNSLVKEWLDEVRDVLYDAEDLLEQIDYEFSKTKLEAEFQTSSSKVYSFESKIIALLDDLESLLNHKIVKDFKIYSGVRSELGNKVSDKKVESTSLVAEEVIYGRNEEKEMIFTWLRSDTDDNKQSILSIVGMGGMGKTTLAQHVYNDPKTEEAKFDEKAWVCVSDAFDALRVSKAIIGAFTNSRDDSDDLEMIHGKFKKRLSGRKFLLVLDDVWNEDRNQWKALQTPLTFGAKGSKILVTTRSHKVASIMQSTYIHQLKQLDEDHSWQTFAKHAFHDQDSELKSELKEIGMKIVKKCQGLPLALETIGCLLQSKSSVSEWEGVLTSEIWDLPIEDSKIVPTLLLSYYHLPSHLKRCFAYCALFPKDHRFDKESLILLWMAQNFLHCSQQSKSPEEVGEDYFNDLVSRSFFKQITWDKEIYFVMHDLLNDLAKYVSGEICYRLGVDGEKGVSRKTRHISYVSGLSQCYTNLCDAKGLRTFITFQGWDCPMSIEESISNFKFLLVLSWRWCIKVPDTIGDLIHLRSLDLSGADIKRLPDSTCSLYNLQELKLNNCFKLKELPLTLHELTNLRRLELKGITLTKVPHRLGELKNLHVWINKFAVEKSSEFSIQQLGELDLRAEELSINNLENIANPCETNLKNKTHIVSLSLRWNLKRNNDDSVKEREVLENLQPSRHLKHLSIDGYLQMISQEQPHNHLKYLWIEECSEFESFPNEGLFAPQLVSFNIRGLKKLKSMPKCMSALLPSLNRVDIFYCPALEMSEGYLPSNVKKMFLGDCSKLVASLKGAWGTNPSLKILYICNVDLECFPGEGLLPLSLDHLEIYDCPNLKKLHYKGLCHLSSLQTLVLRDCPILQCLPEEGLPKSISKLEIVYCLLLKQRCKKQGEDWEKIAHIKSICVDYVNEKRL 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10935g00002 970 Gene3D - 146 321 IPR027417 -
Vium10935g00002 970 FunFam Probable disease resistance protein At1g61300 149 319 - -
Vium10935g00002 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 425 IPR027417 -
Vium10935g00002 970 Gene3D - 325 410 IPR042197 -
Vium10935g00002 970 Pfam Rx N-terminal domain 13 104 IPR041118 -
Vium10935g00002 970 Gene3D - 18 132 - -
Vium10935g00002 970 PRINTS Disease resistance protein signature 265 279 - -
Vium10935g00002 970 PRINTS Disease resistance protein signature 362 376 - -
Vium10935g00002 970 PRINTS Disease resistance protein signature 901 917 - -
Vium10935g00002 970 PRINTS Disease resistance protein signature 191 206 - -
Vium10935g00002 970 FunFam Probable disease resistance protein At1g63360 411 498 - -
Vium10935g00002 970 Gene3D Ribonuclease Inhibitor 834 962 IPR032675 -
Vium10935g00002 970 Gene3D - 411 498 IPR036388 -
Vium10935g00002 970 Gene3D Ribonuclease Inhibitor 662 833 IPR032675 -
Vium10935g00002 970 PANTHER DISEASE RESISTANCE PROTEIN RP 42 937 IPR044974 GO:0006952
Vium10935g00002 970 Gene3D Ribonuclease Inhibitor 518 661 IPR032675 -
Vium10935g00002 970 Pfam NB-ARC domain 171 389 IPR002182 GO:0043531
Vium10935g00002 970 SUPERFAMILY L domain-like 487 935 - -
Vium10935g00002 970 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10935g00002 Vium-Chr10935 6218 10394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10935g00002 187 386 WRKY Transcription Factor Family AT5G45050 27.907 4.69e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10935g00002 - - var:108339252 1289.63