Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10931g00013 ATGAAGACCCCATTACTGTACCACCCTCTCCTCTCCCTTCGATGTAGCAACTTTATTTGGACAACCTCAAAAGCCTTTCATCAAACAATTCAGCTACAAATGGAGAACACCTGGATCCTCACTTTTCACCTTCTTCTTCTCCTCCTGCTCCATTCAAATGCAGCAAAAGGGGCCATTAATGTGGGTGTCGGTGTTGGTGGAAGAGGTGGCATAGGTGTTGGCATTGGTATTGGCAATGGGGGTAGTGGTGGTAACACCGCAGGACCCTCTGGATCCTCAGTGTCAAACCTCAACAATGCTTTCACGGCCCTCCAAGCTTGGAAATCTGCCATAACTGATGACCCTTTGAAGATTTTGGACACTTGGGTTGGTCCCAATGTGTGTTCCTACAAAGGTATCTTCTGCTCGAATTCTCAGGACGAGAATGGAATTGCCACAACAGCATCAACCGAGTCTTCTGTTGTTGCTGGAATAGATCTCAACCATGCAAATCTCCAAGGGACTCTTGTCAAAGAACTATCTTTGCTATCAGATATCACTCTTTTCCATCTAAACACCAACAGGCTTTCTGGCTCAGTTCCCGAGTCTTTCAGAGACCTCACTTCCCTACAAGAGTTGGACCTCAGCAACAACCAACTCTCAGGACCTTTTCCCACTGCCATTCTGTCCATGCCAAGCCTCGTCTACTTGGACCTCAGATACAACGACTTCTCAGGGCAACTTCCCGATGAACTCTTCAACAAGAAACTCGATGCAATATTCCTCAACAACAACAATTTTGGGGGTGAAATTCCAGAGAATCTGGGAAATTCACCTGCCTCGGTGATCAACTTGGCCAACAACAAGTTGAGCGGAAGCATCCCTTTTAGCTTTGGCTTCATGAGTTCAAGACTGAAGGAGATTCTCTTCCTTAACAACCAGTTAACAGGTTGCATTCCTCAGGGAGTAGGGATCTTCACCGAGATGCAAGTGTTGGATGTGAGTTTCAACTCTCTGATGGGCCATTTGCCTGACACAATGAGTTGCTTGCAGGATATAGAGGTTCTCAATTTGGCAAATAACAAGCTCTCAGGGGAA 1077 0.4633 MKTPLLYHPLLSLRCSNFIWTTSKAFHQTIQLQMENTWILTFHLLLLLLLHSNAAKGAINVGVGVGGRGGIGVGIGIGNGGSGGNTAGPSGSSVSNLNNAFTALQAWKSAITDDPLKILDTWVGPNVCSYKGIFCSNSQDENGIATTASTESSVVAGIDLNHANLQGTLVKELSLLSDITLFHLNTNRLSGSVPESFRDLTSLQELDLSNNQLSGPFPTAILSMPSLVYLDLRYNDFSGQLPDELFNKKLDAIFLNNNNFGGEIPENLGNSPASVINLANNKLSGSIPFSFGFMSSRLKEILFLNNQLTGCIPQGVGIFTEMQVLDVSFNSLMGHLPDTMSCLQDIEVLNLANNKLSGE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10931g00013 359 Pfam Leucine rich repeat 182 237 IPR001611 GO:0005515
Vium10931g00013 359 SUPERFAMILY L domain-like 101 359 - -
Vium10931g00013 359 FunFam Leucine-rich repeat extensin-like protein 1 101 270 - -
Vium10931g00013 359 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 92 359 - -
Vium10931g00013 359 Gene3D Ribonuclease Inhibitor 98 273 IPR032675 -
Vium10931g00013 359 Gene3D Ribonuclease Inhibitor 274 359 IPR032675 -
Vium10931g00013 359 PRINTS Leucine-rich repeat signature 343 356 - -
Vium10931g00013 359 PRINTS Leucine-rich repeat signature 203 216 - -
Vium10931g00013 359 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 273 359 - -
Vium10931g00013 359 Pfam Leucine rich repeat N-terminal domain 98 136 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10931g00013 Vium-Chr10931 93395 94638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10931g00013 97 359 Leucine-rich Repeat extension Gene Families AT3G24480 51.711 2.53e-87 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10931g00013 - - vum:124820242 652.514