Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10931g00012 ATGAAGATCGAGGAATTGGACGACGCGGAGTGTAGTATAGACGAACAAGAGAAGTACGAGAAGCAGATGGTCAGCGTTGAAGTGAAGAGAGCGTTGGTGGGCGCAGGTGCTCGGATCCTGTTCTATCCCACTCTCTTGTATAATGTGCTTCGTAACAAAATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGTTTTTGTTACTGGGCGCTGTTCCTTTCCCCAAGGACGTCCCTCTTTTGAAGAGCCTTGGTGTGGGTGGTGTGATTACTCTCAATGAGCCATATGAAACCTTGGTGCCGTCGTCGTTGTATCGGGCTCACGGGATTGATCATTTGGTAATTCCCACAAGAGATTATCTCTTTGCCCCCTCGATTGTTGATATCAACCAGGCTGTGCAGTTCATTCATCAGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGGTTGAATACAAGCACATGACACCTGCTGCTGCCCTGGAATATGTGCGGTCTCGACGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGGCTGTTCAAAACTATAACAATCGCAGGCCGTGTCCTTTACCGTACTCCCCCTCTGGGGACGCAGTTCTTATAACCAAAGCGGATCTTGAAGGATATCATAGCACATGTGATGCTGGTATGGAGCTGGCTATTGTCCCCAAACTTCCAAGGACTATGCCCATGATTGCAAGATTATCTTGCCTGTTTGCATCATTGAAAGTATCTGGTAGCAGTGTACCAATGATCAGGCGGCTGCCGGTTTCTGAGTCACGTGCTTGCTAA 849 0.4794 MKIEELDDAECSIDEQEKYEKQMVSVEVKRALVGAGARILFYPTLLYNVLRNKIEAEFRWWDQIDEFLLLGAVPFPKDVPLLKSLGVGGVITLNEPYETLVPSSLYRAHGIDHLVIPTRDYLFAPSIVDINQAVQFIHQNATCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALEYVRSRRPRVLLAPSQWKAVQNYNNRRPCPLPYSPSGDAVLITKADLEGYHSTCDAGMELAIVPKLPRTMPMIARLSCLFASLKVSGSSVPMIRRLPVSESRAC 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10931g00012 282 Gene3D Protein tyrosine phosphatase superfamily 60 205 IPR029021 -
Vium10931g00012 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
Vium10931g00012 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
Vium10931g00012 282 CDD PTPMT1 60 204 IPR044596 GO:0004721
Vium10931g00012 282 SMART dsp_5 63 204 IPR020422 GO:0006470|GO:0008138
Vium10931g00012 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 54 202 IPR029021 -
Vium10931g00012 282 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Vium10931g00012 282 Pfam Dual specificity phosphatase, catalytic domain 100 203 IPR000340 GO:0008138|GO:0016311
Vium10931g00012 282 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 260 - -
Vium10931g00012 282 FunFam Dual specificity phosphatase domain protein 60 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10931g00012 Vium-Chr10931 79640 81900 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10931g00012 10 270 Protein tyrosine phosphatase (PTP) family AT2G35680 51.456 5.77e-100 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10931g00012 - - gmx:100817410 535.028