Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10931g00011 ATGAATAAGATGAGCAAGTTGAGTTGTGTTAGGAGCTCTGATCTGATAGATGCAAAGCTGGAAGAGCATCAACTGTGTGGATCCAAACAGTGCACCGGTTGTGGTCACAAATTTGAAGGGAAGCCGGACTGGCTAGGTCTTCCGGCGGGAGTGAAATTTGATCCAACAGACCAAGAACTCATAGAACATCTTGAAGCCAAAGTCGAAGCAAAGAACATCAAATCACACCCTCTCATAGATGAGTTCATTCCCACTATTGAAGGAGAAGACGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGGTTAAGCAGACACTTCTTCCACAGGCCCTCAAAGGCTTACACAACAGGGACACGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGAGGGGAAACCCGATGGCACAAGACAGGTAAGACAAGACCGGTGATGGTCAATGGCAAACAAAAGGGTTGCAAGAAGATTCTAGTGCTCTACACCAACTTCGGCAAGAATAGAAAACCCGAAAAGACTAACTGGGTTATGCACCAGTACCATCTGGGCCAGCACGAGGAAGAAAAAGAAGGAGAGCTCGTGGTTTCAAAGATATTCTACCAGACACAACCGAGGCAGTGCAATTGGTCAGATAGAAGTGCCACAACTGGTGAAGCAAGTGGAGAACAACAACCCAACAATAATGGAACAAGAGACAGCGGAAGTGGGAGTTGTTCTTCTAAGGAAGTTCTCACTCACAGAGATGAAATGCCTGCTATCGTTGGAGTCCCTCAAATAACAACCTTCAACACTTCCTTGGACATTCAACAACTCAAATCCGACCATTTTAGCTTCATTCCATTCAGAAAAAGCTTCGATGAGGTTGGAATAGGAGAAGCTTCCACGGGAGTGCAAGCATCAAGGTCGTGTGAGGAAGTACATGAAGGGCATAATATTGTAGCACATCATCATCATCATCAACAACAACAGCAGCAAAATCAGCATGCGCACCAACAAATTGCAACCACAGCCTTCCATATCAGTAGGCCTTCGCATCCCATCTCGACCATCATCTCTCCTCCACCCCTTCACCACGCATCCATCATCCTAGACGACAACGCCTACCATGTCTCAACGATCATGCTTCAAAATGAAAACTTCCAGCAGCAGCACCATCATAAACTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCAACTGATATCAAAGAGGAGTCATCCATTACAAACCAACAAGAGGCTGAATGGTTGAAATACTCTTCTTACTGGACAGACCCTGGCAACCTGCACGATCATCATGAGTAG 1344 0.4606 MNKMSKLSCVRSSDLIDAKLEEHQLCGSKQCTGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNIKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEASGEQQPNNNGTRDSGSGSCSSKEVLTHRDEMPAIVGVPQITTFNTSLDIQQLKSDHFSFIPFRKSFDEVGIGEASTGVQASRSCEEVHEGHNIVAHHHHHQQQQQQNQHAHQQIATTAFHISRPSHPISTIISPPPLHHASIILDDNAYHVSTIMLQNENFQQQHHHKLGGRSASGLEELIMGCTSTDIKEESSITNQQEAEWLKYSSYWTDPGNLHDHHE 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10931g00011 447 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Vium10931g00011 447 MobiDBLite consensus disorder prediction 215 249 - -
Vium10931g00011 447 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Vium10931g00011 447 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Vium10931g00011 447 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Vium10931g00011 447 MobiDBLite consensus disorder prediction 215 248 - -
Vium10931g00011 447 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 12 335 IPR044799 GO:0003700
Vium10931g00011 447 FunFam NAC domain-containing protein 73 56 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10931g00011 Vium-Chr10931 63445 68624 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10931g00011 14 436 NAC Transcription Factor Family AT5G56620 54.018 1.88e-136 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium10931g00011 NAM 3.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10931g00011 - - gmx:100794811 786.949