Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1092g00017 ATGGGGTCTGGTCTTAATGCTGAATTATCCAAGAAAACTCCAATTTTCGGTCTCAAAGTTTGGGAAATAATTGGAATTGTAGTTGGTTTGTCAATAATAGTCATTCTTTCTGTGGTCTCACTTTGCCTTTCGTCAAGGAAGAAATCTAGAAAAGAGAAAGACAGGATTCCCCTTAGTCAAATACCAACCGTGTCAAAGGAAATCAAAGAAGTGCGGGTTGAACAAGTGCCAACTAATTCATTTGCTCCTCGCGATGGAATACTTCTTACAATTCGGGACAAGTCCAGTGGCAAGGAATCAGACAATGTCATGGTTCATTTAGGTGTGGGGAAGATGAAGAATGGGAACAGCAACACTCACTCAGATTCATTTCGTTACATAGAGAAAGATGGAAGCGGTTCACACTCACAGTCCGGAGAAGAAGGTAGCTCTGGCACGTTTACTGTGTACAAGCAATCTTCTTCACACCCTATAACAGCTCCCTCACCTCTATCTGGCCTTCCAGAATTTTCTCACTTGGGTTGGGGTCACTGGTTTACCTTGAGGGATCTTGAACTTGCCACTAACCGTTTTTCCAAAGAAAATGTCCTGGGAGAAGGAGGGTATGGAGTGGTTTATAAGGGTCAGTTGGTCAATGGAACTCCAGTGGCAGTTAAAAAGATACTCAATAACATTGGTCAAGCAGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGCCATGTCCGACACAAAAACCTGGTTCGCCTTTTGGGGTTCTGCGTTGAGGGAACCCACAGGATGTTGGTTTATGAGTATGTCAATAATGGAAACTTAGAGCAATGGCTTCATGGAGGAATGCGCCACCATGGATACCTTACCTGGGAAGCACGTATCAAGATTCTGCTGGGCACAGCCAAAGCGCTAGCATATTTGCATGAAGCAATTGAGCCAAAGGTGGTACACCGTGATATCAAGTCAAGCAACATATTAATTGATGATGATTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTATTGGGTGCTGGGAAGAGTTATGTCACCACAAGAGTTATGGGAACTTTTGGATACGTGGCTCCTGAATATGCAAATACTGGTCTCCTAAATGAGAAGAGTGATGTTTATAGCTTTGGTGTTTTGCTATTGGAAGGAATTACTGGAAGAGACCCAGTTGACTATGGTCGACCAGCAAATGAAGTGAACCTGGTTGATTGGCTGAAGATGATGGTTGGTAATAGGAGATCAGAAGAAGTGGTGGACCCCAACATTGAGGTGAAGCCATCCACAAGAGCTTTAAAACGGGCTCTCTTAACAGCTTTAAGATGTGTAGATCCAGATTCTGAGAAAAGGCCCAAGATGGGCCAAGTCGTTCGCATGATGGAGTCAGAGGAATACCCTTTACCAAGAGAGGACCGAAGACACCGAAGAAGAAATCGAGGGGGGAGTGGAGAAATGGATTCCCAGAAGGAATATTCTGACACAGACAGGAGTGAGATTCAGGATTCCAGAGAAGAAAGAAGAGGGTGA 1533 0.4397 MGSGLNAELSKKTPIFGLKVWEIIGIVVGLSIIVILSVVSLCLSSRKKSRKEKDRIPLSQIPTVSKEIKEVRVEQVPTNSFAPRDGILLTIRDKSSGKESDNVMVHLGVGKMKNGNSNTHSDSFRYIEKDGSGSHSQSGEEGSSGTFTVYKQSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGVVYKGQLVNGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGFCVEGTHRMLVYEYVNNGNLEQWLHGGMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSYVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPANEVNLVDWLKMMVGNRRSEEVVDPNIEVKPSTRALKRALLTALRCVDPDSEKRPKMGQVVRMMESEEYPLPREDRRHRRRNRGGSGEMDSQKEYSDTDRSEIQDSREERRG 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1092g00017 510 CDD STKc_IRAK 197 463 - -
Vium1092g00017 510 PANTHER OS01G0323000 PROTEIN 5 491 - -
Vium1092g00017 510 FunFam Putative receptor-like protein kinase 173 266 - -
Vium1092g00017 510 Gene3D Transferase(Phosphotransferase) domain 1 267 477 - -
Vium1092g00017 510 Gene3D Phosphorylase Kinase; domain 1 172 266 - -
Vium1092g00017 510 SUPERFAMILY Protein kinase-like (PK-like) 175 469 IPR011009 -
Vium1092g00017 510 Pfam Protein kinase domain 192 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1092g00017 510 MobiDBLite consensus disorder prediction 130 154 - -
Vium1092g00017 510 FunFam Putative receptor-like serine/threonine-protein kinase 267 478 - -
Vium1092g00017 510 ProSitePatterns Protein kinases ATP-binding region signature. 197 220 IPR017441 GO:0005524
Vium1092g00017 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Vium1092g00017 510 ProSiteProfiles Protein kinase domain profile. 191 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1092g00017 510 SMART serkin_6 191 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1092g00017 510 MobiDBLite consensus disorder prediction 448 510 - -
Vium1092g00017 510 MobiDBLite consensus disorder prediction 111 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1092g00017 Vium-Chr1092 62768 67077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1092g00017 116 465 Trihelix Transcription Factor Family AT1G70460 44.444 8.19e-91 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vium1092g00017 Pkinase 9.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1092g00017 - - gmx:100787014 894.034