Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1092g00014 ATGGGGTCTGGTCTTAATGCTGAATTATCCAAGAAAACTCCAATTTTCGGTCTCAAAGTTTGGGAAATAATTGGAATTGTAGTTGGTTTGTCAATAATAGTCATTCTTTCTGTGGTCTCACTTTGCCTTTCGTCAAGGAAGAAATCTAGAAAAGAGAAAGACAGGATTCCCCTTAGTCAAATACCAACCGTGTCAAAGGAAATCAAAGAAGTGCGGGTTGAACAAGTGCCAACTAATTCATTTGCTCCTCGCGATGGAATACTTCTTACAATTCGGGACAAGTCCAGTGGCAAGGAATCAGACAATGTCATGGTTCATTTAGGTGTGGGGAAGATGAAGAATGGGAACAGCAACACTCACTCAGATTCATTTCGTTACATAGAGAAAGATGGAAGCGGTTCACACTCACAGTCCGGAGAAGAAGGTAGCTCTGGCACGTTTACTGTGTACAAGCAATCTTCTTCACACCCTATAACAGCTCCCTCACCTCTATCTGGCCTTCCAGAATTTTCTCACTTGGGTTGGGGTCACTGGTTTACCTTGAGGGATCTTGAACTTGCCACTAACCGTTTTTCCAAAGAAAATGTCCTGGGAGAAGGAGGGTATGGAGTGGTTTATAAGGGTCAGTTGGTCAATGGAACTCCAGTGGCAGTTAAAAAGATACTCAATAACATCAGTGGTCAAGCAGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGCCATGTCCGACACAAAAACCTGGTTCGCCTTTTGGGGTTCTGCGTTGAGGGAACCCACAGGATGTTGGTTTATGAGTATGTCAATAATGGAAACTTAGAGCAATGGCTTCATGGAGGAATGCGCCACCATGGATACCTTACCTGGGAAGCACGTATCAAGATTCTGCTGGGCACAGCCAAAGCGCTAGCATATTTGCATGAAGCAATTGAGCCAAAGGTGGTACACCGTGATATCAAGTCAAGCAACATATTAATTGATGATGATTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTATTGGGTGCTGGGAAGAGTTATGTCACCACAAGAGTTATGGGAACTTTTGGATACGTGGCTCCTGAATATGCAAATACTGGTCTCCTAAATGAGAAGAGTGATGTTTATAGCTTTGGTGTTTTGCTATTGGAAGGAATTACTGGAAGAGACCCAGTTGACTATGGTCGACCAGCAAATGAAGTGAACCTGGTTGATTGGCTGAAGATGATGGTTGGTAATAGGAGATCAGAAGAAGTGGTGGACCCCAACATTGAGGTGAAGCCATCCACAAGAGCTTTAAAACGGGCTCTCTTAACAGCTTTAAGATGTGTAGATCCAGATTCTGAGAAAAGGCCCAAGATGGGCCAAGTCGTTCGCATGATGGAGTCAGAGGAATACCCTTTACCAAGAGAGGACCGAAGACACCGAAGAAGAAATCGAGGGGGGAGTGGAGAAATGGATTCCCAGAAGGAATATTCTGACACAGACAGGAGTGAGATTCAGGATTCCAGAGAAGAAAGAAGAGGGTGA 1536 0.4401 MGSGLNAELSKKTPIFGLKVWEIIGIVVGLSIIVILSVVSLCLSSRKKSRKEKDRIPLSQIPTVSKEIKEVRVEQVPTNSFAPRDGILLTIRDKSSGKESDNVMVHLGVGKMKNGNSNTHSDSFRYIEKDGSGSHSQSGEEGSSGTFTVYKQSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGVVYKGQLVNGTPVAVKKILNNISGQAEKEFRVEVEAIGHVRHKNLVRLLGFCVEGTHRMLVYEYVNNGNLEQWLHGGMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSYVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPANEVNLVDWLKMMVGNRRSEEVVDPNIEVKPSTRALKRALLTALRCVDPDSEKRPKMGQVVRMMESEEYPLPREDRRHRRRNRGGSGEMDSQKEYSDTDRSEIQDSREERRG 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1092g00014 511 MobiDBLite consensus disorder prediction 449 511 - -
Vium1092g00014 511 PANTHER OS01G0323000 PROTEIN 5 492 - -
Vium1092g00014 511 MobiDBLite consensus disorder prediction 130 149 - -
Vium1092g00014 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Vium1092g00014 511 FunFam Putative receptor-like serine/threonine-protein kinase 268 479 - -
Vium1092g00014 511 FunFam Putative receptor-like protein kinase 173 267 - -
Vium1092g00014 511 ProSitePatterns Protein kinases ATP-binding region signature. 197 220 IPR017441 GO:0005524
Vium1092g00014 511 ProSiteProfiles Protein kinase domain profile. 191 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1092g00014 511 SUPERFAMILY Protein kinase-like (PK-like) 175 470 IPR011009 -
Vium1092g00014 511 Gene3D Transferase(Phosphotransferase) domain 1 268 478 - -
Vium1092g00014 511 Gene3D Phosphorylase Kinase; domain 1 172 267 - -
Vium1092g00014 511 SMART serkin_6 191 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1092g00014 511 Pfam Protein kinase domain 192 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1092g00014 511 MobiDBLite consensus disorder prediction 111 149 - -
Vium1092g00014 511 CDD STKc_IRAK 197 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1092g00014 Vium-Chr1092 61634 67077 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1092g00014 116 466 Trihelix Transcription Factor Family AT1G70460 44.875 4.41e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vium1092g00014 Pkinase 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1092g00014 - - gmx:100787014 890.182