Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1092g00011 ATGCTATTCTGGGCCGTGGATAATCCCGCACCCGCCAATTATTTATTAATTTCGGGTGACCGAGACTTCTCAAATGCTCTCCATCAACTTCGGATGAGGAGATATAATATTCTTCTTGCGCAACCTCAGAAGGCATCAGCACCCTTGGTTGCTGCTGCCAAGAGTGTATGGCTTTGGACTAGCCTCTTAGCTGGAGGACCTCCTCTGTCTAATGGTGAATCGCAACAACTTGGTAGTGGTAGCCTAAGCCATGTTTCATCTTCTGACTCCTTACAAGTTCCAGTTACAAGTACTGCTCAGATGCAGCAACAAGTAGAATCCTATTCAGAAGTTCATGCAGGAAATTCAAAATTTCCAAATGGAGGCAGGGGATTCGATACTAGGTTTCAGGGTAAACCTAATTGGAGAAGCCCGAGTCAATCAAATGCACCCAGAGCCGTGAATCCACCACCATCTGGACTTCAAGATAATCGTAATAATATAAACTCTTATCGACCTGGCAACTTTAATCCAAATGTTCCGTTGAGTGGATCTGCTACAAATTATGTTCATGGCAACACTGATCAGTTATGGAGCAGTAATAGTAATCTACAGGGCAATCATCAAGTTCCTTATTCCCAGCCATTAAGACCAAATAACTTCCCATTGCAGCCTCCTTTTGCGCCTAGTAATTCATATACTCCAAATCCCCATACTTTTGCACCTCCAATGGTGCCACCTAGAACTGGTGGTCCCAATTTCAACTCAGGGCCACAAACCAATGTGCCAGATATTGGTAATCTAAACATTTCGGGATATCCTAATAGTGTTCATAACCCACCTTCTATTCAACAACGGAATGGAGATTTGAAACAAAATCCTAATAGTAGTGCTCCACATGTTTTAAGATCAATTGATGAAAAAAATGGACATGTGGTACGTAACAGTGGCACACAACAATTACGCCAAGGTTATCAACATGGTCCAGAATATCAACCAATGCTACCGGCAGCAATGGGTAATAATAATCCTCCTGGTAGTGGTATGTGGGGTACTCCAGGATGTCCTAAGCCTTCTGAATATGTACAAGGCCTAATAGGGGTTGTTTTACTTGCCTTGAACTCACTGAAAAATGCAAAGATGATGCCAACTGAGGCAAATATAACTGATTGCATCCGTTTTGGAGATCCCAAGCACCGCAACACTGATGTTAAGAAGGCTCTTGAAAGTGCTATTGAGCAGAATATGGTTGTGAAACAGAATTTAGGTGCTTTGCCATTGTATGTTGGTAAGAATGATAAACTATGGAAATGCGTCAATCCTTTAGGTGGTAATCCTAAGCAGCGCTCAAAAGAAACATGGGATCAAATTGAAAAGTTTTTAACAACTCCTGCTGGAAGATCAGCAATAATGGCTACTCTGTGCAAGTACGAAGCAGGTATTGTGATTAAGAATATGTGCTTCAAAGATCTTGCTTTGGGTGATGTCCTTCAGATATTGAACATGTTAATTACCCATAAAAAATGGATTGCACATCATCCGTCTGGTTGGCAACCACTTAGCATTGCTCTACCTGAGACAAACCCTGATTCAGGGGTTGTGGCTAGAGTATAA 1593 0.4193 MLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLSNGESQQLGSGSLSHVSSSDSLQVPVTSTAQMQQQVESYSEVHAGNSKFPNGGRGFDTRFQGKPNWRSPSQSNAPRAVNPPPSGLQDNRNNINSYRPGNFNPNVPLSGSATNYVHGNTDQLWSSNSNLQGNHQVPYSQPLRPNNFPLQPPFAPSNSYTPNPHTFAPPMVPPRTGGPNFNSGPQTNVPDIGNLNISGYPNSVHNPPSIQQRNGDLKQNPNSSAPHVLRSIDEKNGHVVRNSGTQQLRQGYQHGPEYQPMLPAAMGNNNPPGSGMWGTPGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEANITDCIRFGDPKHRNTDVKKALESAIEQNMVVKQNLGALPLYVGKNDKLWKCVNPLGGNPKQRSKETWDQIEKFLTTPAGRSAIMATLCKYEAGIVIKNMCFKDLALGDVLQILNMLITHKKWIAHHPSGWQPLSIALPETNPDSGVVARV 530
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium1092g00011 530 MobiDBLite consensus disorder prediction 132 178 - -
Vium1092g00011 530 MobiDBLite consensus disorder prediction 70 114 - -
Vium1092g00011 530 MobiDBLite consensus disorder prediction 70 178 - -
Vium1092g00011 530 Pfam OST-HTH Associated domain 468 517 IPR025677 -
Vium1092g00011 530 PANTHER LIMKAIN B LKAP 1 410 IPR024768 GO:0005777|GO:0010468
Vium1092g00011 530 MobiDBLite consensus disorder prediction 263 294 - -
Vium1092g00011 530 Pfam NYN domain 1 54 IPR021139 GO:0004540
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium1092g00011 Vium-Chr1092 34090 38264 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1092g00011 1 167 C2H2 Transcription Factor Family AT5G61190 48.503 1.29e-35 140
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1092g00011 - - gmx:100794608 962.214