Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1092g00010 ATGGGCGGAGATGGAGCGACGGCCAACGCGGAGGCGCAGTACGCCTCTGCAAAGACATCGGTGTGGTGGGACATCGAAAACTGCCATGTGCCCAAGGGTTCGGATCCGCACGCGATCGCGCAGAACATCAGCTCCGCGCTGGTCCGCATGAATTACCGTGGCCCTGTCTCCATCTCCGCCTACGGAGACACCACGCGCATCCCACCCTCAGTACAACACGCGCTCTCCAGCACCGGAATTTCCCTCCACCACGTCCCTGCCGGCGTGAAAGACGCAAGTGACAAGAAGATTCTTGTTGACATGCTATTCTGGGCCGTGGATAATCCCGCACCCGCCAATTATTTATTAATTTCGGGTGACCGAGACTTCTCAAATGCTCTCCATCAACTTCGGATGAGGAGATATAATATTCTTCTTGCGCAACCTCAGAAGGCATCAGCACCCTTGGTTGCTGCTGCCAAGAGTGTATGGCTTTGGACTAGCCTCTTAGCTGGAGGACCTCCTCTGTCTAATGGTGAATCGCAACAACTTGGTAGTGGTAGCCTAAGCCATGTTTCATCTTCTGACTCCTTACAAGTTCCAGTTACAAGTACTGCTCAGATGCAGCAACAAGTAGAATCCTATTCAGAAGTTCATGCAGGAAATTCAAAATTTCCAAATGGAGGCAGGGGATTCGATACTAGGTTTCAGGGTAAACCTAATTGGAGAAGCCCGAGTCAATCAAATGCACCCAGAGCCGTGAATCCACCACCATCTGGACTTCAAGATAATCGTAATAATATAAACTCTTATCGACCTGGCAACTTTAATCCAAATGTTCCGTTGAGTGGATCTGCTACAAATTATGTTCATGGCAACACTGATCAGTTATGGAGCAGTAATAGTAATCTACAGGGCAATCATCAAGTTCCTTATTCCCAGCCATTAAGACCAAATAACTTCCCATTGCAGCCTCCTTTTGCGCCTAGTAATTCATATACTCCAAATCCCCATACTTTTGCACCTCCAATGGTGCCACCTAGAACTGGTGGTCCCAATTTCAACTCAGGGCCACAAACCAATGTGCCAGATATTGGTAATCTAAACATTTCGGGATATCCTAATAGTGTTCATAACCCACCTTCTATTCAACAACGGAATGGAGATTTGAAACAAAATCCTAATAGTAGTGCTCCACATGTTTTAAGATCAATTGATGAAAAAAATGGACATGTGGTACGTAACAGTGGCACACAACAATTACGCCAAGGTTATCAACATGGTCCAGAATATCAACCAATGCTACCGGCAGCAATGGGTAATAATAATCCTCCTGGTAGTGGTATGTGGGGTACTCCAGGATGTCCTAAGCCTTCTGAATATGTACAAGGCCTAATAGGGGTTGTTTTACTTGCCTTGAACTCACTGAAAAATGCAAAGATGATGCCAACTGAGGCAAATATAACTGATTGCATCCGTTTTGGAGATCCCAAGCACCGCAACACTGATGTTAAGAAGGCTCTTGAAAGTGCTATTGAGCAGAATATGGTTGTGAAACAGAATTTAGGTGCTTTGCCATTGTATGTTGGTAAGAATGATAAACTATGGAAATGCGTCAATCCTTTAGGTGGTAATCCTAAGCAGCGCTCAAAAGAAACATGGGATCAAATTGAAAAGTTTTTAACAACTCCTGCTGGAAGATCAGCAATAATGGCTACTCTGTGCAAGTACGAAGCAGGTATTGTGATTAAGAATATGTGCTTCAAAGATCTTGCTTTGGGTGATGTCCTTCAGATATTGAACATGTTAATTACCCATAAAAAATGGATTGCACATCATCCGTCTGGTTGGCAACCACTTAGCATTGCTCTACCTGAGACAAACCCTGATTCAGGGGTTGTGGCTAGAGTATAA 1893 0.449 MGGDGATANAEAQYASAKTSVWWDIENCHVPKGSDPHAIAQNISSALVRMNYRGPVSISAYGDTTRIPPSVQHALSSTGISLHHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLSNGESQQLGSGSLSHVSSSDSLQVPVTSTAQMQQQVESYSEVHAGNSKFPNGGRGFDTRFQGKPNWRSPSQSNAPRAVNPPPSGLQDNRNNINSYRPGNFNPNVPLSGSATNYVHGNTDQLWSSNSNLQGNHQVPYSQPLRPNNFPLQPPFAPSNSYTPNPHTFAPPMVPPRTGGPNFNSGPQTNVPDIGNLNISGYPNSVHNPPSIQQRNGDLKQNPNSSAPHVLRSIDEKNGHVVRNSGTQQLRQGYQHGPEYQPMLPAAMGNNNPPGSGMWGTPGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEANITDCIRFGDPKHRNTDVKKALESAIEQNMVVKQNLGALPLYVGKNDKLWKCVNPLGGNPKQRSKETWDQIEKFLTTPAGRSAIMATLCKYEAGIVIKNMCFKDLALGDVLQILNMLITHKKWIAHHPSGWQPLSIALPETNPDSGVVARV 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1092g00010 630 Gene3D - 9 161 - -
Vium1092g00010 630 CDD PIN_limkain_b1_N_like 18 142 - -
Vium1092g00010 630 MobiDBLite consensus disorder prediction 232 278 - -
Vium1092g00010 630 MobiDBLite consensus disorder prediction 363 394 - -
Vium1092g00010 630 MobiDBLite consensus disorder prediction 170 214 - -
Vium1092g00010 630 MobiDBLite consensus disorder prediction 170 278 - -
Vium1092g00010 630 Pfam OST-HTH Associated domain 568 617 IPR025677 -
Vium1092g00010 630 Pfam NYN domain 18 154 IPR021139 GO:0004540
Vium1092g00010 630 PANTHER LIMKAIN B LKAP 13 510 IPR024768 GO:0005777|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1092g00010 Vium-Chr1092 34090 38561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1092g00010 8 267 C2H2 Transcription Factor Family AT5G61190 56.923 2.27e-83 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1092g00010 - - gmx:100794608 1151.73