Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1092g00007 ATGAAAATTCAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGAAAGAAATCCGAAAGGTGTTTTATTGTGATCTCTGCAACAAGCAATACAAATTAGCTATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGATTCAAACAAATGAAGGAAATGCATGGTGGTGGTAGTCGAGATGATAGGCAAAAGCGAGAACAACAGCGTCAAGAGAAAGAAATGGCAAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGCCTTCAATTGCAACAAGATTCTGGATCAGGAACAGTGTCCTCCGAATCTAGAACTGCCACTGCTCTTACAGATCAGGAGCAGAGAAATACTTTGAAATTTGGGTTTTCGTCTAAAGGCAGTGGTTCCAAGATAACTTTTGGTGCCAAGAAACAAAATGTTGCGAAGAAGCAAAGTGCCCCCCCGATCTCCTCTATATTTAGTAATGATAGCGATGAAGAATAA 507 0.4004 MKIQVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGGGSRDDRQKREQQRQEKEMAKFAQIADAQKQQRLQLQQDSGSGTVSSESRTATALTDQEQRNTLKFGFSSKGSGSKITFGAKKQNVAKKQSAPPISSIFSNDSDEE 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1092g00007 168 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 2 168 - -
Vium1092g00007 168 MobiDBLite consensus disorder prediction 145 168 - -
Vium1092g00007 168 MobiDBLite consensus disorder prediction 58 85 - -
Vium1092g00007 168 Pfam Zinc-finger double-stranded RNA-binding 24 51 IPR022755 -
Vium1092g00007 168 MobiDBLite consensus disorder prediction 58 121 - -
Vium1092g00007 168 MobiDBLite consensus disorder prediction 90 121 - -
Vium1092g00007 168 ProSitePatterns Zinc finger C2H2 type domain signature. 26 48 IPR013087 -
Vium1092g00007 168 SUPERFAMILY beta-beta-alpha zinc fingers 22 58 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1092g00007 Vium-Chr1092 15444 16839 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1092g00007 2 168 C2H2 Transcription Factor Family AT5G26610 57.803 1.03e-52 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1092g00007 - - vum:124824962 298.516