Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1092g00002 ATGGACTATCGATGGACTAATGGTAGGCTGGATACAGGTGGCCGTGACAGGAGGCAATCTAAAAGGGAACAGGCATATCAGGACTCTCTTGTTGAGGATTTGTCAGAAGACTTCCGCTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGACAACGTAGAGCAAGCATCTCTGGACACACACTTAACATCATCTAATATTGGCTTTAAGCTTCTCCAAAAGATGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAACAAGGAATCACCGAGCCAATTAAATCTGGGATTAGAGATCCAAGACTTGGAGTTGGTAAGCAAGAAGAAGATGATTTCTTTACTGCAGAAGAAAATATCCAGAGAAAAAAACTTGATGTTGAATTGGAAGAGACAGAAGAACATGTGAAGAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGAAAGAAATCCGAAAGGTGTTTTATTGTGATCTCTGCAACAAGCAATACAAATTAGCTATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGATTCAAACAAATGAAGGAAATGCATGGTGGTGGTAGTCGAGATGATAGGCAAAAGCGAGAACAACAGCGTCAAGAGAAAGAAATGGCAAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGCCTTCAATTGCAACAAGATTCTGGATCAGGAACAGTGTCCTCCGAATCTAGAACTGCCACTGCTCTTACAGATCAGGAGCAGAGAAATACTTTGAAATTTGGGTTTTCGTCTAAAGGCAGTGGTTCCAAGATAACTTTTGGTGCCAAGAAACAAAATGTTGCGAAGAAGCAAAGTGCCCCCCCGATCTCCTCTATATTTAGTAATGATAGCGATGAAGAATAA 918 0.4161 MDYRWTNGRLDTGGRDRRQSKREQAYQDSLVEDLSEDFRLPINHRPTENVDLDNVEQASLDTHLTSSNIGFKLLQKMGWKGKGLGKDEQGITEPIKSGIRDPRLGVGKQEEDDFFTAEENIQRKKLDVELEETEEHVKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGGGSRDDRQKREQQRQEKEMAKFAQIADAQKQQRLQLQQDSGSGTVSSESRTATALTDQEQRNTLKFGFSSKGSGSKITFGAKKQNVAKKQSAPPISSIFSNDSDEE 305
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium1092g00002 305 MobiDBLite consensus disorder prediction 195 222 - -
Vium1092g00002 305 Pfam Zinc-finger double-stranded RNA-binding 161 188 IPR022755 -
Vium1092g00002 305 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Vium1092g00002 305 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
Vium1092g00002 305 MobiDBLite consensus disorder prediction 9 24 - -
Vium1092g00002 305 Pfam G-patch domain 67 107 IPR000467 GO:0003676
Vium1092g00002 305 SMART G-patch_5 64 109 IPR000467 GO:0003676
Vium1092g00002 305 MobiDBLite consensus disorder prediction 195 305 - -
Vium1092g00002 305 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 305 - -
Vium1092g00002 305 MobiDBLite consensus disorder prediction 227 279 - -
Vium1092g00002 305 SUPERFAMILY beta-beta-alpha zinc fingers 144 196 IPR036236 -
Vium1092g00002 305 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium1092g00002 Vium-Chr1092 8516 12080 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1092g00002 1 305 C2H2 Transcription Factor Family AT5G26610 62.701 4.66e-122 350
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1092g00002 - - gmx:100793206 532.717