Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium1092g00002 | ATGGACTATCGATGGACTAATGGTAGGCTGGATACAGGTGGCCGTGACAGGAGGCAATCTAAAAGGGAACAGGCATATCAGGACTCTCTTGTTGAGGATTTGTCAGAAGACTTCCGCTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGACAACGTAGAGCAAGCATCTCTGGACACACACTTAACATCATCTAATATTGGCTTTAAGCTTCTCCAAAAGATGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAACAAGGAATCACCGAGCCAATTAAATCTGGGATTAGAGATCCAAGACTTGGAGTTGGTAAGCAAGAAGAAGATGATTTCTTTACTGCAGAAGAAAATATCCAGAGAAAAAAACTTGATGTTGAATTGGAAGAGACAGAAGAACATGTGAAGAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGAAAGAAATCCGAAAGGTGTTTTATTGTGATCTCTGCAACAAGCAATACAAATTAGCTATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGATTCAAACAAATGAAGGAAATGCATGGTGGTGGTAGTCGAGATGATAGGCAAAAGCGAGAACAACAGCGTCAAGAGAAAGAAATGGCAAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGCCTTCAATTGCAACAAGATTCTGGATCAGGAACAGTGTCCTCCGAATCTAGAACTGCCACTGCTCTTACAGATCAGGAGCAGAGAAATACTTTGAAATTTGGGTTTTCGTCTAAAGGCAGTGGTTCCAAGATAACTTTTGGTGCCAAGAAACAAAATGTTGCGAAGAAGCAAAGTGCCCCCCCGATCTCCTCTATATTTAGTAATGATAGCGATGAAGAATAA | 918 | 0.4161 | MDYRWTNGRLDTGGRDRRQSKREQAYQDSLVEDLSEDFRLPINHRPTENVDLDNVEQASLDTHLTSSNIGFKLLQKMGWKGKGLGKDEQGITEPIKSGIRDPRLGVGKQEEDDFFTAEENIQRKKLDVELEETEEHVKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGGGSRDDRQKREQQRQEKEMAKFAQIADAQKQQRLQLQQDSGSGTVSSESRTATALTDQEQRNTLKFGFSSKGSGSKITFGAKKQNVAKKQSAPPISSIFSNDSDEE | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium1092g00002 | 305 | MobiDBLite | consensus disorder prediction | 195 | 222 | - | - | |
Vium1092g00002 | 305 | Pfam | Zinc-finger double-stranded RNA-binding | 161 | 188 | IPR022755 | - | |
Vium1092g00002 | 305 | ProSiteProfiles | G-patch domain profile. | 66 | 111 | IPR000467 | GO:0003676 | |
Vium1092g00002 | 305 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 163 | 185 | IPR013087 | - | |
Vium1092g00002 | 305 | MobiDBLite | consensus disorder prediction | 9 | 24 | - | - | |
Vium1092g00002 | 305 | Pfam | G-patch domain | 67 | 107 | IPR000467 | GO:0003676 | |
Vium1092g00002 | 305 | SMART | G-patch_5 | 64 | 109 | IPR000467 | GO:0003676 | |
Vium1092g00002 | 305 | MobiDBLite | consensus disorder prediction | 195 | 305 | - | - | |
Vium1092g00002 | 305 | PANTHER | FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED | 1 | 305 | - | - | |
Vium1092g00002 | 305 | MobiDBLite | consensus disorder prediction | 227 | 279 | - | - | |
Vium1092g00002 | 305 | SUPERFAMILY | beta-beta-alpha zinc fingers | 144 | 196 | IPR036236 | - | |
Vium1092g00002 | 305 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium1092g00002 | Vium-Chr1092 | 8516 | 12080 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium1092g00002 | 1 | 305 | C2H2 Transcription Factor Family | AT5G26610 | 62.701 | 4.66e-122 | 350 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium1092g00002 | - | - | gmx:100793206 | 532.717 |