Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10925g00018 ATGGGCAACACATGCCGTGGATCTTTGAAAGGGAAATATATTCAGGGCTTCAGCCAGCCCGAAGACCACTCCAAGCGCACCACCCTTTCTGATCGTTCCGACTCCGAACACCCCTCCTCAGCCAGACAAAATATCAATTCTGCAGAAAACAACAACAGCAACAGCACCGGCATCATCAACAACAACAACAATCCACCCTTCAACTCCAAGAAAGAGTCCATCATGCGCCGCGGCCTAGACAACCAGGCATATTATGTCTTGGGCCATAAGACTCCCAACATTCGTGATCTATACACTCTTGGCCGCAAATTGGGACAGGGACAATTTGGCACTACTTATTTATGCACCGAGAATTCTACTTCCAATGAATATGCCTGCAAATCTATCTCCAAAAGAAAGTTGATTTCCAAGGAGGATGTTGAGGATGTCAGGAGGGAAATTCAGATAATGCATCATTTAGCTGGTCACAAGAACATTGTCACCATTAAGGGTGCTTACGAGGATCCTCTCTATGTGCATATAGTCATGGAGCTTTGTTCTGGGGGTGAGTTGTTTGATCGCATCATCCAGAGGGGCCACTATACCGAGAGGAAGGCTGCAGAGTTGACCAAAATTATTGTTGGGGTTGTTGAGGCTTGTCATTCCCTTGGGGTCATGCACAGAGATCTCAAGCCAGAAAACTTTCTTTTGGTCAATAAAGATGATGATTTCTCTCTTAAAGCAATTGACTTTGGCCTCTCCGTTTTCTTCAAACCCGGTCAAGTTTTCACTGATGTAGTCGGCAGCCCATACTATGTTGCTCCTGAGGTTCTCCTCAAGCATTATGGGCCTGAAGCAGACGTGTGGACAGCCGGTGTCATACTGTACATATTGCTTAGTGGTGTACCACCATTTTGGGCAGAGACCCAACAGGGTATATTTGATGCAGTATTGAAGGGACATATAGATTTTGACTCAGATCCTTGGCCTCTAATATCTGACAGTGGAAAAGATCTGATCAGAAAGATGCTGTGTTCTCAGCCTTCAGAACGGTTGACTGCTCATCAAGTGTTATGTCATCCTTGGATATGTGAAAATGGAGTTGCGCCTGACAGGGCAATAGACCCTGCTGTTCTTTCTCGTCTTAAACAGTTTTCTGCAATGAATAAGCTGAAGAAGATGGCATTGCGGGTGATTGCTGAAAGTCTATCTGAAGAGGAGATTGCTGGTTTGAGAGAAATGTTTCAGGCTATGGATACCGATAACAGTGGTGCAATCACTTTTGATGAACTCAAAGCTGGTCTAAGAAGATATGGTTCTACCCTTAAAGATGTAGAAATACGTGATCTGATGGAAGCGGCTGATGTCGACAAAAGTGGAACCATAGATTATGGGGAGTTTATTGCTGCTACAGTTCATCTCAACAAACTAGAACGTGAAGAACATCTTATTGCAGCATTCCAATATTTTGACAAGGATGGCAGTGGTTATATTACGGTTGATGAACTTCAACAAGCTTGTGCAGAACATAACATGACTGATGCTTTTCTTGAAGATATTATTAGGGAAGTTGATCAAGATAATGATGGAAGGATTGATTATGGTGAATTTGCTGCAATGATGCAAAAAGGCAATGCTGGAATTGGTAGGAGGACTATGCGCAATAGTCTGAATTTAAGCATGAGGGACGCATCAAGTGCTCAATAG 1686 0.4359 MGNTCRGSLKGKYIQGFSQPEDHSKRTTLSDRSDSEHPSSARQNINSAENNNSNSTGIINNNNNPPFNSKKESIMRRGLDNQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTENSTSNEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSDPWPLISDSGKDLIRKMLCSQPSERLTAHQVLCHPWICENGVAPDRAIDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDNSGAITFDELKAGLRRYGSTLKDVEIRDLMEAADVDKSGTIDYGEFIAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQQACAEHNMTDAFLEDIIREVDQDNDGRIDYGEFAAMMQKGNAGIGRRTMRNSLNLSMRDASSAQ 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10925g00018 561 CDD STKc_CAMK 98 355 - -
Vium10925g00018 561 FunFam Calcium-dependent protein kinase 5 184 364 - -
Vium10925g00018 561 SMART efh_1 475 503 IPR002048 GO:0005509
Vium10925g00018 561 SMART efh_1 439 467 IPR002048 GO:0005509
Vium10925g00018 561 SMART efh_1 403 431 IPR002048 GO:0005509
Vium10925g00018 561 SMART efh_1 509 537 IPR002048 GO:0005509
Vium10925g00018 561 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Vium10925g00018 561 Pfam EF-hand domain pair 474 535 IPR002048 GO:0005509
Vium10925g00018 561 Pfam EF-hand domain pair 404 464 IPR002048 GO:0005509
Vium10925g00018 561 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Vium10925g00018 561 MobiDBLite consensus disorder prediction 24 38 - -
Vium10925g00018 561 PANTHER SERINE/THREONINE-PROTEIN KINASE 90 530 - -
Vium10925g00018 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Vium10925g00018 561 MobiDBLite consensus disorder prediction 1 71 - -
Vium10925g00018 561 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Vium10925g00018 561 SMART serkin_6 98 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10925g00018 561 FunFam Calcium-dependent protein kinase 1 100 183 - -
Vium10925g00018 561 FunFam Calcium-dependent protein kinase 1 364 538 - -
Vium10925g00018 561 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Vium10925g00018 561 Gene3D Transferase(Phosphotransferase) domain 1 184 365 - -
Vium10925g00018 561 CDD EFh 475 535 IPR002048 GO:0005509
Vium10925g00018 561 ProSitePatterns EF-hand calcium-binding domain. 518 530 IPR018247 -
Vium10925g00018 561 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Vium10925g00018 561 SUPERFAMILY EF-hand 380 537 IPR011992 -
Vium10925g00018 561 MobiDBLite consensus disorder prediction 39 70 - -
Vium10925g00018 561 SUPERFAMILY Protein kinase-like (PK-like) 77 380 IPR011009 -
Vium10925g00018 561 Gene3D - 366 538 - -
Vium10925g00018 561 Gene3D Phosphorylase Kinase; domain 1 100 183 - -
Vium10925g00018 561 Pfam Protein kinase domain 98 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10925g00018 561 ProSiteProfiles Protein kinase domain profile. 98 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10925g00018 561 ProSiteProfiles EF-hand calcium-binding domain profile. 507 540 IPR002048 GO:0005509
Vium10925g00018 561 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Vium10925g00018 561 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10925g00018 Vium-Chr10925 88721 97423 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10925g00018 1 557 EF-hand Containing Proteins AT2G17290 83.333 0.0 955
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium10925g00018 Pkinase 4.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10925g00018 K13412 - gmx:100778173 1036.94