Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10925g00012 ATGATGGATAATGAGGTGTTAGAATTTGATATTGGGTTGGGCGGAGTAGGCGAGGGAGAATATGACGATGATGGAGGGGACATCGAACACCCAATGGATGAAGATGAATTGGGCGATAGCAGTGGAGGTGGAGGTGGTGGTGGTGGTGGTGGTGTAACCGCTGGAATATATCTTCCGGAGGGGGACCTCTCAGATCTGGAACCCTGCGAGGGCATGGAATTCGAGTCTGAAGAGGCTGCCAAGGCCTTCTACAATTCCTACGCCCGTCGTGTTGGGTTTAGTACACGTGTCAGCTCATCCCGTCGTTCGAGGCGCGATGGAGCTATCATACAGAGGCAATTTGTTTGCGCAAAGGAGGGTTTTCGCAACTTGAATGAGAAGCGCACGAAGGATAGAGAGATCAAGCGTCCCCGAACAATTACCAGAGTCGGATGTAAGGCGTCTTTGTCTGTGAAAATGCAGGACTCTGGGAAGTGGGTGGTGTCTGGCTTTGTTAGAGAACATAATCACGAACTGGTTCCCCCGGACCAGGTGCATTGCCTTCGCTCTCACAGGCAAATATCGGGAGCTGCCAAGACCCTCATTGATACCTTGCAGGCTGCTGGGATGGGTCCTCGTAGAATTATGTCAGCACTGATTAAAGAGTATGGTGGGATTAGCAAAGTCGGCTTCACAGAGGTCGACTGTAGGAACTACATGAGAAATAATAGGCAGAGAAGTTTAGAAGGGGACATTCAACTTGTTCTCGATTATTTAAGACAAATGCACGCCGAAAACCCAAATTTTTTCTATGCTGTGCAAGGGGATGAGGATCAGTCCATAAACAATGTTTTCTGGGCTGATCCCAAGGCAAGGATGAATTACACATTTTTTGGTGACACTGTAACTTTTGACACTACATACCGATCTAATAGGTATCGCTTACCATTTGCTCCCTTTACTGGTGTAAATCATCATGGACAGCCTGTTCTTTTTGGTTGTGCCTTCCTAATTAATGAATCTGAAGCATCATTTGTTTGGCTTTTCAAGACATGGCTTATGGCCATGTCTGGACGTCCACCAGTGTCCATAACAACTGATCATGATTCTGTAATTCGTTCAGCCATAATACAAGTCTTCCCCGAGACCCGACACCGCTTCTGCAAGTGGCATATCTTTAAAAAATGCCAGGAGAAGCTATCCCATATTTTCCTCAAATATCCAAATTTTGAAGCTGAATTTCACAAATGTGTTAACTTGACTGAGTCAATTGAGGAATTTGAGTCTTGCTGGTCAACACTGGTAGATAAATATGATCTCAGGGATCATGAATGGCTTCAAGCAATATATTCTTCTGGCAGGCATTGGGTACCTGTATATTTGCGAGACACATTCTTTGCAGAAATGTCCATCACTCAGCGAAGTGATAGCATGAACTCTTACTTTGATGGGTATATAAATGCTTCAACCAATTTAAATCAGTTCTTTAAGCTTTATGAGAAAGCACTTGAAAGTCGCAATGAGAAGGAAGTGAGAGCTGATTATGACACAATGAATACTTTGCCAGTATTGAGGACCCCATCTCCAATGGAGAAGCAAGCATCTGAGCTTTACACGAGAAAAATTTTCATGAGGTTCCAGGAGGAGTTAGTTGGTACACTAACATTCATGGCATCCAAAGCTGATGATGATGGGGAGGTCATTACATATAATGTAGCTAAATTTGGAGAGGAACATAAAGGGTACTATGTTAAATTTAATGTTTTGGAGATGAAAGCAACTTGTAGTTGCCAAATGTTTGAGTTTTCAGGCCTTCTTTGCAGACATGTTCTGGCAGTCTTTAGAGTTACCAATGTGCTTACTCTCCCATCTCACTATATATTGAAACGTTGGACAAGAAATGCAAAGAGCAATGTAATATTAGAAGACCATTCTTGTGATGTATATACTTACTATTTGGAATCTCATACAGTTAGATATAACACCCTTCGACACGAGGCCTTTAAATTTGTTGATGAAGGTGCACAGTCTACTGAAACTTACGATGTTGCCATGGATGCTTTACAAGAAGCTGCAAGAAGAGTTTCTCAGGCAATGCAAAATGAGGGAAGAATTCCTATCAGCAATGGAAAATTAAGGAGTCATGTGATGAATGATGAAAGTCATGCTAATTACACAAGTGCATGCCAAGAAGAATGCTTGAGCCAACATACATCTAAGGATGATTTGGATACAAATATTAGAAAGCTTCTGAATGAACTTGAGTGTGCAAATCGGAAGTGCGAAATTTATCGGTCCAACCTGCTTTCAGTTTTGAAAGCTGTTGAGGATCACAAGTTAGAGTTATCTGTTAAGGTGGAAAATATCAAAATAAGCATGAAAGATGGCATCTAA 2373 0.4227 MMDNEVLEFDIGLGGVGEGEYDDDGGDIEHPMDEDELGDSSGGGGGGGGGGVTAGIYLPEGDLSDLEPCEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGAAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLVLDYLRQMHAENPNFFYAVQGDEDQSINNVFWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLMAMSGRPPVSITTDHDSVIRSAIIQVFPETRHRFCKWHIFKKCQEKLSHIFLKYPNFEAEFHKCVNLTESIEEFESCWSTLVDKYDLRDHEWLQAIYSSGRHWVPVYLRDTFFAEMSITQRSDSMNSYFDGYINASTNLNQFFKLYEKALESRNEKEVRADYDTMNTLPVLRTPSPMEKQASELYTRKIFMRFQEELVGTLTFMASKADDDGEVITYNVAKFGEEHKGYYVKFNVLEMKATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSHYILKRWTRNAKSNVILEDHSCDVYTYYLESHTVRYNTLRHEAFKFVDEGAQSTETYDVAMDALQEAARRVSQAMQNEGRIPISNGKLRSHVMNDESHANYTSACQEECLSQHTSKDDLDTNIRKLLNELECANRKCEIYRSNLLSVLKAVEDHKLELSVKVENIKISMKDGI 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10925g00012 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 63 689 IPR031052 GO:0006355
Vium10925g00012 790 ProSiteProfiles Zinc finger SWIM-type profile. 575 611 IPR007527 GO:0008270
Vium10925g00012 790 Coils Coil 733 760 - -
Vium10925g00012 790 MobiDBLite consensus disorder prediction 20 34 - -
Vium10925g00012 790 Pfam FAR1 DNA-binding domain 83 174 IPR004330 -
Vium10925g00012 790 SMART 26again6 586 613 IPR006564 GO:0008270
Vium10925g00012 790 MobiDBLite consensus disorder prediction 12 54 - -
Vium10925g00012 790 Pfam SWIM zinc finger 570 609 IPR007527 GO:0008270
Vium10925g00012 790 Pfam MULE transposase domain 295 388 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10925g00012 Vium-Chr10925 49984 55449 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium10925g00012 MULE 3e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10925g00012 - - gmx:100793442 1432.16