Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10920g00002 ATGGATTCCCCAACTCTTCTCTTCCCCCAACCCGATCTCTATTTACAGACTCGCGCTGGCAACCGCATTCCAGCGCACGCTACCATTCTGGCTTCCGTATCCCCGGTTCTACAAAACGTGATAAAGTCCTCCAACCGAATCGTCAAAATTCACGGCGTTCCAGACGCTGCCGTCACGGCTTTCGTAGCGTTCCTCTACTATGCCAGGTGCACGGAGGAGGATATGCATAAGTACGGAATGCACCTTCTTGTACTGTCGCACGTGTACATGGTGAAGCATCTGAAACAGCGGTGCATCAAGGGACTGGGCGACCGCGTCAGTACGGAGAACGTAGTGGACGTGTTGCAACTGGCGCGGCTCTGCGACGCGCCGGATCTCTACCTCAAGTGTGCCAGGCACCTCACGAACTGTTTCAAAGCGGTGAAGGAAACCGAGGGATGGAGATTCCTGCAGAACCACGACCCCTGCCTAGAGCTTGAGATTCTCCGTTTCATGGAAGAACATGAAAAGAGGAAGAGGAAGGCGAGGAAGAGAAGGGAGGATGGTAGGTTATACACGGAATTGAGCGAAGCGATGGTATGTCTGGAGCACATATGCACGGAGGGGTGCACGGAGGTGTGGCCGTTTGATGTGGAGGTCAGGCGAGAGAGAGAACCGTGTTCAATGTTCGGCACGTGTCAGGGTATGCAAAATTTGATTCGACACTTCGCCACCTGCGAGAGCGTTAAGCGACGGTGTTTACGGTGTAAGCGCATGTGGCAACTCTTCAGACTTCATTCCTCTATTTGCCTGCGACAAGATACCTGCAAGGTTCCTCTGTGCAGGTCAACATCCTCCCTCTTTTACCTCTTTTATGTTTTTCATAATCTGTATTCTACATATAAACCATTAATTTATTATTTAATCAAATAA 912 0.5066 MDSPTLLFPQPDLYLQTRAGNRIPAHATILASVSPVLQNVIKSSNRIVKIHGVPDAAVTAFVAFLYYARCTEEDMHKYGMHLLVLSHVYMVKHLKQRCIKGLGDRVSTENVVDVLQLARLCDAPDLYLKCARHLTNCFKAVKETEGWRFLQNHDPCLELEILRFMEEHEKRKRKARKRREDGRLYTELSEAMVCLEHICTEGCTEVWPFDVEVRREREPCSMFGTCQGMQNLIRHFATCESVKRRCLRCKRMWQLFRLHSSICLRQDTCKVPLCRSTSSLFYLFYVFHNLYSTYKPLIYYLIK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10920g00002 303 SUPERFAMILY TAZ domain 181 276 IPR035898 -
Vium10920g00002 303 CDD BACK 107 150 - -
Vium10920g00002 303 Pfam BTB/POZ domain 11 100 IPR000210 GO:0005515
Vium10920g00002 303 Gene3D Potassium Channel Kv1.1; Chain A 9 101 IPR011333 -
Vium10920g00002 303 Gene3D - 106 179 - -
Vium10920g00002 303 Gene3D TAZ domain 180 281 IPR035898 -
Vium10920g00002 303 ProSiteProfiles BTB domain profile. 11 74 IPR000210 GO:0005515
Vium10920g00002 303 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 10 276 IPR044513 -
Vium10920g00002 303 Pfam TAZ zinc finger 189 274 IPR000197 -
Vium10920g00002 303 SUPERFAMILY POZ domain 12 103 IPR011333 -
Vium10920g00002 303 SMART TAZ_2 182 275 IPR000197 -
Vium10920g00002 303 FunFam BTB/POZ and TAZ domain-containing protein 2 107 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10920g00002 Vium-Chr10920 52733 54543 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vium10920g00002 BTB 6.5e-08 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10920g00002 - - pvu:PHAVU_009G170600g 486.108