Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10920g00001 ATGACAACCACACTCTCTTTGCTTTTCTTCTTCTTCTTCTTTCTCCTCCCTCTTACCCTTTTCTCTTCACCAGTTCAAAACCCTGAAGAGGTTGTTCAAGAGGTCAACAGGAAAATCAACGCCTCCATAGCTAGGCCTAGGAGGAGCTTGGGCTATCTTTCATGCGGCAGCGGCAACCCCATTGATGACTGTTGGCGGTGCGACCCGAATTGGGAGAAGAACCGGCAAAAGCTAGCGGACTGCGCAATCGGGTTCGGAAAGAACGCCATCGGTGGAAGGGATGGGAAGATCTACGTGGTGGACGACGCCGGCGACGACGACCCGGTGAACCCGAAGCCAGGGACGCTCCGCCACGCGGTGATCCAAGATGAGCCCCTCTGGATCATCTTCGCGCGCGACATGGTGATCCAGCTGAAGGAGGAGCTTCTGATGAACTCTTTCAAGACAATCGACGGCCGCGGCGCCAGCGTCCACATCGCCGGCGGTCCCTGCATCACCGTGCAGTACGTGACGAACATCATCATCCACGGCATCCACGTGCACGACTGCAAGCAGGGAGGGAACGCCATGGTGCGCGCCTCCCCACGGCACTACGGGTGGAGAACCGTGTCGGACGGCGACGGCGTGTCGATCTTCGGAGGAAGTCACGTGTGGGTCGACCATTGCTCCTTGTCGAACTGCAACGATGGGTTGATCGACGCCATCCATGGGTCCACCGCCATCACCATCTCCAACAATTACATGACGCATCATGACAAGGTCATGCTCTTAGGTCACAGTGACGCTTACACTCAGGACAAGGACATGCAAGTCACCATTGCTTTCAACCACTTCGGTGAAGGCCTTGTTCAAAGGATGCCAAGGTGTAGGCTTGGGTATTTCCATGTTGTGAACAATGATTATACTCACTGGGAAATGTATGCCATTGGGGGGAGTGCTAATCCAACTATCAACAGCCAAGGCAACAGATTTGTTGCACCAGATGACAGATTCAGCAAAGAGGTGACAAAACGTGAAGATGCGGCAGAGAGTGAATGGCAGAGTTGGAATTGGAGATCAGAAGGGGACATGTTAGTAAATGGTGCCTTTTTCACTGCTTCTGGTGCTGGAGCCTCCTCAAGTTATGCAAGGGCTTCAAGCCTTAGTGCAAGACCATCTTCACTTGTTGGTTCCATTACAACAGGTGCTGGTGCACTCACCTGCAAGAAAGGTTCTCCTTGCTGA 1224 0.5351 MTTTLSLLFFFFFFLLPLTLFSSPVQNPEEVVQEVNRKINASIARPRRSLGYLSCGSGNPIDDCWRCDPNWEKNRQKLADCAIGFGKNAIGGRDGKIYVVDDAGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELLMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGIHVHDCKQGGNAMVRASPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDAYTQDKDMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKREDAAESEWQSWNWRSEGDMLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALTCKKGSPC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10920g00001 407 PANTHER PECTATE LYASE 18-RELATED 25 405 IPR045032 GO:0030570
Vium10920g00001 407 Pfam Pectate lyase 145 324 IPR002022 -
Vium10920g00001 407 FunFam Pectate lyase 58 400 - -
Vium10920g00001 407 SUPERFAMILY Pectin lyase-like 49 401 IPR011050 -
Vium10920g00001 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Vium10920g00001 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Vium10920g00001 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Vium10920g00001 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Vium10920g00001 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Vium10920g00001 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Vium10920g00001 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Vium10920g00001 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Vium10920g00001 407 SMART amb_all 133 330 IPR002022 -
Vium10920g00001 407 Gene3D - 58 400 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10920g00001 Vium-Chr10920 24274 26848 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10920g00001 2 407 Polysaccharide Lyase AT5G63180 79.707 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10920g00001 K01728 - gmx:100814679 735.332