Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1090g00004 ATGGCTGCTATGGATACCGGTGTTCAGGGCTGCATCTTATCCGTTTTGATTCTCCACGACGAGGAAATCTCAGTCACCGCCGAGAAGATCAACGCTTTGTTGAAGGCTGCCAATGTCTCCGTCGAGTCCTACTGGCCAAGCCTCTTCGCCAAGCTCGCTCAGAATAAGAACATCGAAGACCTTATCTTGAACGCCGGTTCAGGCGGAGGTGCCGCCGTTGCCGTTGCCGCTCCCGCCGCCGGTGGTGCTGGTGCCGGTGCCGCAGCACCCGCCGCTGAGGAAAAGAAGGAAGAAGTGAAGGAAGAAAGCGACGACGATATGGGATTCGGTTTGTTTGATTAG 342 0.5585 MAAMDTGVQGCILSVLILHDEEISVTAEKINALLKAANVSVESYWPSLFAKLAQNKNIEDLILNAGSGGGAAVAVAAPAAGGAGAGAAAPAAEEKKEEVKEESDDDMGFGLFD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1090g00004 113 MobiDBLite consensus disorder prediction 91 107 - -
Vium1090g00004 113 Pfam 60s Acidic ribosomal protein 25 112 - -
Vium1090g00004 113 FunFam 60S acidic ribosomal protein P1 3 66 - -
Vium1090g00004 113 MobiDBLite consensus disorder prediction 83 113 - -
Vium1090g00004 113 Hamap 50S ribosomal protein L12 [rpl12]. 9 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vium1090g00004 113 CDD Ribosomal_P1 9 112 - -
Vium1090g00004 113 Gene3D - 6 66 IPR038716 -
Vium1090g00004 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 4 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1090g00004 Vium-Chr1090 72884 74403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1090g00004 4 113 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 53.097 1.01e-34 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1090g00004 K02942 - gmx:100801741 140.198