Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1090g00001 ATGGTGTTGCCACTTGCTCTGTTTGGTAACTGTTGGTGTTCCTGTTCTTCTACCATCTTCTGTCCATTCCCACTACCAAACCCACCCTCTCGTTATTCTTCAACCTTTCACACTAAGCTTCAGCCTCAACCCCAATGCTCACTCGCTAAAATCCACGTCAAACCCCAACTATCAAACCGCGACTCCATTCGTCGCTGTCGCAGCACCAATTCCCTTCCCATTGCTGATGCTCAAGCCGCGTCGTTCTTTGCTCTGTTTCAAGAAATTGGGATTGGCTTTGAGGAAACTCGAGTGCTCTTCTCCAACAACCCTGACCTAACCTCTGTGTCTGTAGAATCATTGCGCGCTCGCCTTAGTTCTCTACGATCTCTCGACTTCGACCCTCTCGCACTCGGCAAATTAATCACAAAGCGTCCAACTGTCCTAACAGACAACCAAATTGACCCTTTGTTGACCTTCCTTCGAGACGAATTGCAAGGAAAACTCGAGAAACCGCGACTGAATCGCCTCTTATCTTCTACGGAACAAAATATATTGGCGAGTTTTCCTCAGAAGGTTCGATTCCTCGTTGACCGGGGAATCCCCGTTGACCAGGTTGTGCATGTGCTTAACAAAGTGAGTTTGCCAAAGGTCTTGTGTGGCAGGTCGGTTGATGAAATCGATAGAACTTTAGCGTTCTTCGAACCCTTTGGTGGCATTGATTTGATTCTTAAACGCCCTCAAATTTTGAACCATGATTTGGATGCTCAAATTATTCCAAGAGTGAATGTTCTGATGGAGCTTAGTGATGGAGATGTGGATAGTGTTGGGAAGGTGTTGGTTAGGTTTCCCCTTTTTTTGAACTATAGTGTGGAACATGTGGAGGGACATGTTGGGTTTTTGAGTTCTTTTGCTGAGCTAGATTACAGACAGATATTTAGGATAATACAAGTGTATCCGGCTGTTGTTACTGCCAGCAGAGAGAGGAAACTGCGTCCAAGAATACAGTTTCTCAAGGACTGTGGGTTAGACTCAGATGAAATCTTCAAGTTCTTGATTAAAGCGCCCACATTTCTCAGCACTTCATTCCGTGAGAACATTGCATATAAGCTGGTGTTGCTGGTGAAGATTGGGTATAGGTTCAGGACAAAGGACTTCTCAGTGGCGGTTAGGTCTGCCACTAGGACAAACAGTATGAACATGCAGAAGGTGATTGGTATGTTCTTGAATTATGGGTTTTCATGTGAAGAGATCGTTGCCATGAGCAAGAAGCATCCACAAATACTACAGTATAATCACGCTTCTTTGGAGATGAAGATGGAATACTTGATAGAGGAAATGGGGCGTGACACTGAGGAGTTACTGGTTTTTCCTGCATTCCTTGGGTACAAGTTAGATGATAGGATTAAGCATAGGTATGAAGTGAAGAAGAGTGTTAGAGGTGCAGGAATGTCTATCAATAAGCTTTTATCTGTTTCCGAGGAGACATTCACTGGCAAACCAAAAAAGGCCCATGCATAG 1500 0.4453 MVLPLALFGNCWCSCSSTIFCPFPLPNPPSRYSSTFHTKLQPQPQCSLAKIHVKPQLSNRDSIRRCRSTNSLPIADAQAASFFALFQEIGIGFEETRVLFSNNPDLTSVSVESLRARLSSLRSLDFDPLALGKLITKRPTVLTDNQIDPLLTFLRDELQGKLEKPRLNRLLSSTEQNILASFPQKVRFLVDRGIPVDQVVHVLNKVSLPKVLCGRSVDEIDRTLAFFEPFGGIDLILKRPQILNHDLDAQIIPRVNVLMELSDGDVDSVGKVLVRFPLFLNYSVEHVEGHVGFLSSFAELDYRQIFRIIQVYPAVVTASRERKLRPRIQFLKDCGLDSDEIFKFLIKAPTFLSTSFRENIAYKLVLLVKIGYRFRTKDFSVAVRSATRTNSMNMQKVIGMFLNYGFSCEEIVAMSKKHPQILQYNHASLEMKMEYLIEEMGRDTEELLVFPAFLGYKLDDRIKHRYEVKKSVRGAGMSINKLLSVSEETFTGKPKKAHA 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1090g00001 499 FunFam - 62 262 - -
Vium1090g00001 499 Gene3D Transcription termination factor 3, mitochondrial 266 498 IPR038538 -
Vium1090g00001 499 Gene3D Transcription termination factor 3, mitochondrial 74 265 IPR038538 -
Vium1090g00001 499 SMART mt_12 342 373 IPR003690 GO:0003690|GO:0006355
Vium1090g00001 499 SMART mt_12 132 161 IPR003690 GO:0003690|GO:0006355
Vium1090g00001 499 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Vium1090g00001 499 SMART mt_12 97 127 IPR003690 GO:0003690|GO:0006355
Vium1090g00001 499 SMART mt_12 306 337 IPR003690 GO:0003690|GO:0006355
Vium1090g00001 499 SMART mt_12 233 264 IPR003690 GO:0003690|GO:0006355
Vium1090g00001 499 SMART mt_12 444 476 IPR003690 GO:0003690|GO:0006355
Vium1090g00001 499 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Vium1090g00001 499 Pfam mTERF 85 364 IPR003690 GO:0003690|GO:0006355
Vium1090g00001 499 Pfam mTERF 328 490 IPR003690 GO:0003690|GO:0006355
Vium1090g00001 499 PANTHER CGI-12 PROTEIN-RELATED 66 261 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium1090g00001 mTERF 2.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1090g00001 - - pvu:PHAVU_009G045200g 871.307