Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10908g00007 ATGACCACTTCTTTCTCTGACCTTCTCTCTTCTCCCACCGACCACAACCTAGGAGGTTCCGAAATACCTCAAGAGTTGTCGGATCAAACAGGTTCTGGTGTGCCAAAATTCAAGTCCACACCTCCTCCATCTCTCCCTATCTCTCATCCTCAAAATCATCCTCTTCCACCCATTTCTCCTTCTTACTTTAACATCCCTCATGGGTTAAGCCTCGCTGAACTTCTTGACTCCCCAGTTCTCCTTCACTCTTCCAACGTTTTGCCATCTCCGACCACTGGATCATACGCTGGTCAAGGCTTCAATTGGAAGAGTTATGGGGAAAGCCAGCAGCATGTCAAAGAAGAAGACAAAAGCTTCTCAAGTTTCTCCTTCCAAACACAACCACAAACACAGATTCCTCTTACGTCTTCAACTGGATTTCAATCTTCAAACGGGTGGAGTTTCCCGGAAACTGCTAAACAAGATGGATTCTCTTCAAGAATGAATATGAGTATGGTGAAAACTGAAGCCTCTTCAGGTATGCAGAGTTTCAACTCTGAGAATAATAACCACAGCAGTGCTGGTCTTCAATCAGATTATAGCAGTTACCAGCCACAGGTTCAGATCTTAAGCAGAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGGCAAAAGCAAGTGAAAGGAAGTGAGAATCCAAGAAGCTACTACAAGTGCACATACCCCAGTTGTCCAACAAAGAAAAAGGTTGAGAGGTCCTTAGATGGACAAATTACTGAGATTGTTTACAAAGGTAGTCATAATCATCCTAAGCCTCAGGCTAACAAGAGGAACTCATTGTCTGCCTCATCACTCGCAATAAACAGCGTCAACAATGAAATAGCACAAGCCACTCATCACATGGATTCGGTTGCAACTCCAGAAAACTCATCAATATCAATGGAAGATGACGACTTTGGTCAGAGCAAATCAGGAGGAGATGAGTTTGATAATGATGAACCTGATGCCAAAAGATGGAGAATAGAGGGTGAAAATGAGGGTATATCAGCTGTTGGAAGTAGAACAGTGAGAGAACCCAGAGTTGTGGTTCAGACAACCAGTGACATCGATATTCTAGATGATGGATACAGATGGAGGAAATATGGGCAGAAAGTAGTCAAGGGAAATCCAAATCCAAGGAGTTACTACAAATGCACATTCACAGGATGTCCAGTGAGGAAGCACGTAGAGAGAGCTTCACATGACCTAAGGGCAGTGATCACAACCTATGAGGGAAAGCACAACCATGACGTGCCGGCAGCACGTGGCAGTGGCAGCAACTCTATCAGCAGAGCAGTGCCTATAAACGCTACCACAAACAGCACCCCTGGTGCAGCAACTTCCATATACAGTAACAATTCTCACCAGAATCTTAGACCACCAGCACCAGAAAGGACACAACACTACAACCCCAGTATGCAACAGGGCTCAGGAAGTTTTGGATTCTCAGGGTTTGGGAATCCATTAATGGGGTCTTACATGAACCAACAATCTGACAATGTGTTCGCTTCTAGAGCCAAGGAAGAGCCAGGAGATGACTCGTTTCTTGACTCTTTGCTATGTTAA 1587 0.4455 MTTSFSDLLSSPTDHNLGGSEIPQELSDQTGSGVPKFKSTPPPSLPISHPQNHPLPPISPSYFNIPHGLSLAELLDSPVLLHSSNVLPSPTTGSYAGQGFNWKSYGESQQHVKEEDKSFSSFSFQTQPQTQIPLTSSTGFQSSNGWSFPETAKQDGFSSRMNMSMVKTEASSGMQSFNSENNNHSSAGLQSDYSSYQPQVQILSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQANKRNSLSASSLAINSVNNEIAQATHHMDSVATPENSSISMEDDDFGQSKSGGDEFDNDEPDAKRWRIEGENEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSNSISRAVPINATTNSTPGAATSIYSNNSHQNLRPPAPERTQHYNPSMQQGSGSFGFSGFGNPLMGSYMNQQSDNVFASRAKEEPGDDSFLDSLLC 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10908g00007 528 MobiDBLite consensus disorder prediction 1 37 - -
Vium10908g00007 528 MobiDBLite consensus disorder prediction 1 59 - -
Vium10908g00007 528 ProSiteProfiles WRKY domain profile. 208 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium10908g00007 528 MobiDBLite consensus disorder prediction 39 59 - -
Vium10908g00007 528 SUPERFAMILY WRKY DNA-binding domain 205 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium10908g00007 528 MobiDBLite consensus disorder prediction 294 328 - -
Vium10908g00007 528 MobiDBLite consensus disorder prediction 446 488 - -
Vium10908g00007 528 SUPERFAMILY WRKY DNA-binding domain 358 426 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium10908g00007 528 SMART WRKY_cls 366 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium10908g00007 528 SMART WRKY_cls 207 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium10908g00007 528 ProSiteProfiles WRKY domain profile. 361 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium10908g00007 528 FunFam WRKY transcription factor 33 353 419 - -
Vium10908g00007 528 MobiDBLite consensus disorder prediction 169 194 - -
Vium10908g00007 528 FunFam WRKY transcription factor 197 267 - -
Vium10908g00007 528 Pfam WRKY DNA -binding domain 208 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium10908g00007 528 Pfam WRKY DNA -binding domain 367 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium10908g00007 528 MobiDBLite consensus disorder prediction 314 328 - -
Vium10908g00007 528 Gene3D WRKY domain 194 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium10908g00007 528 MobiDBLite consensus disorder prediction 294 312 - -
Vium10908g00007 528 Gene3D WRKY domain 353 419 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium10908g00007 528 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 76 457 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10908g00007 Vium-Chr10908 38774 42070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10908g00007 1 527 WRKY Transcription Factor Family AT2G38470 44.504 6.05e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium10908g00007 WRKY 3.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10908g00007 K13424 - gmx:100127397 805.823