Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10901g00006 ATGTGTTGTTGTACTTGGCCTACGTGCAACTCTAGCTGGATGAAGATGGAGGGTTCTTCAGGGTCTGCTTTTCAGAATTCTGGCAGTTCCAGGGCTTTGAACAGTTCTGGAGTCTCGGATAGGAACCAAAGAGTTCATTATCCCGAAAGGAACCCCTTCTCGGGTGAGGCATCTCAGGATTCGGGGTACAAGAAGGAAAGGGAAAGGGTTCCGTTGGGTCAAGGTGATCAGGCAAAAAATTTGGGTGGTGGGTTTTCTGGGTTGTGTGAAGATGAAGTTGAGGTTGACCCGTTTTATGGTGCTGTGGAATGGGGTGATATTAGCTTGAGGCAGTGGTTGGATAAACCAGAACGATCGGTGGATGCCTTTGAATGCTTGCACATATTTAGACAAATAGTAGAAATTGTTAGTGTAGCGCATTCTCAAGGAGTTGTAGTTCATAATGTGAGGCCTTCCTGTTTTGTCATGTCTTCTTTCAACCATATCTCGTTTATTGAATCAGCATCTTGTTCAGATACTGGCTCCGATTCTTTAGGAGAAGGATTAAACGACCAAGGTGGTGAGATCAAAACTCCAACATCTCTCTGTCCCCATGATATGCATCAGCAGAGCTTGGGAAGTGAAGATTTTGTGACTGTCAAGACATCTACAACCACTGCTCGCTCAGATTCTAGTTGCATGCTGTCGAGTGCTGTGTATGCAGCTCGTGCATCTTTGATAGAAGAAACAGAAGAACATAAAATGAAAGATAGGAGGAAGGATGAAGAAGTGGAAGGGAAGAAGCAATCATTTCCAATGAAGCAGATACTGCTAATGGAGATGAGTTGGTACACTAGTCCTGAAGAGGTTGCTGGTGACTCTAGTTCTTGTGCTTCAGATGTTTATCGATTAGGGGTTCTTCTTTTTGAGGTATTTTGTCCGCTAAGCTCGAGAGAAGAAAAGAGTAGAACCATGTCTAGCCTTAGACATAGGGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCCAAAGAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGACCCTAGTAGTCGTCCAACACTGGGGGAGTTGTTGCAGAGTGAGTTCCTTAATGAGCAAAGAGATGATATGGAAGAACGTGAAGCAGCGATAGAGCTGAGACAAAGGATTGAGGATAAGGAGTTGCTGCTAGAATTCCTTTTGTTACTTCAACAGAGGAAACAGGAAGTTGCTGAGAAGTTGCAACACACTATCTCTTTTCTGTGCTCAGATATTGAAGAAGTGACTAAGCAGAAAATTAGATTTAAAGAGATTACTGGTACTGAACTGGGGAGTGATGATCGTTCAGCATCAAGTTTCCCATCAATGACAGTTGTGGACAGTGATGATTCTGCATATGAAGGGACTAGAAAACGAGTCAGACTAGGGACTCATGTTAAAAACAATGAGGAATTTGATGATGATGATGATGATGATGATGATGATGGAGGAGGTGATCAGAAAAGTAACGGAAGTTTTCTTTCAAAAAGTTCTCGGTTAATGAAGAACTTTAAGAAACTCGAGTCAGCATACTTTTTAACACGATGTAGACCGGCGTATTCCTCTGGGAAACTGGTGAGTAGGCATCCTCCTCTAGCAAGTGATGGTAGAGGTTCTGTTGTTTTGACTGAAAGAAGTTGCATCAATGACTTGAAATCAAAAGAGCAGTGCAGGGAGGGTGCAAGTGCTTGGATAAATCCTTTTTTAGAGGGATTGTGCAAGTATTTATCATTCAGCAAGATAAAGGTTAAGGCTGACCTAAAACAAGGGGATCTTTTGCATTCATCCAACCTTGTATGCTCACTCAGTTTTGATCGAGATGGAGAATTTTTTGCTACTGCTGGTGTGAATAAGAAGATTAAAGTGTTCGAATGTGATTCAATCATAAATGATGATCGTGATATCCACTATCCAGTTGTGGAGATGGCTAGCAGGTCAAAGTTAAGCAGTTTATGTTGGAATGCATACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTGCAGTTGTGGGATGTGACAAGAAGCCAAGTACTCTCTGAGATGAGGGAGCACGAGCGGCGCGTCTGGTCCATTGATTTCTCGTCAGCAGATCCAACAATGTTGGCAAGTGGAAGCGATGATGGTTCTGTCAAGCTATGGAGTATCAATCAGGCAATTCCATTTTTGCACTTGGTGGATGTCAGCTTTGAAACTAAACGGAGTTAG 2235 0.4264 MCCCTWPTCNSSWMKMEGSSGSAFQNSGSSRALNSSGVSDRNQRVHYPERNPFSGEASQDSGYKKERERVPLGQGDQAKNLGGGFSGLCEDEVEVDPFYGAVEWGDISLRQWLDKPERSVDAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGEGLNDQGGEIKTPTSLCPHDMHQQSLGSEDFVTVKTSTTTARSDSSCMLSSAVYAARASLIEETEEHKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYTSPEEVAGDSSSCASDVYRLGVLLFEVFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQRIEDKELLLEFLLLLQQRKQEVAEKLQHTISFLCSDIEEVTKQKIRFKEITGTELGSDDRSASSFPSMTVVDSDDSAYEGTRKRVRLGTHVKNNEEFDDDDDDDDDDGGGDQKSNGSFLSKSSRLMKNFKKLESAYFLTRCRPAYSSGKLVSRHPPLASDGRGSVVLTERSCINDLKSKEQCREGASAWINPFLEGLCKYLSFSKIKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDSIINDDRDIHYPVVEMASRSKLSSLCWNAYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQAIPFLHLVDVSFETKRS 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10901g00006 744 Gene3D Transferase(Phosphotransferase) domain 1 106 376 - -
Vium10901g00006 744 SMART serkin_6 13 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10901g00006 744 SUPERFAMILY Protein kinase-like (PK-like) 98 366 IPR011009 -
Vium10901g00006 744 ProSiteProfiles Trp-Asp (WD) repeats profile. 691 726 IPR001680 GO:0005515
Vium10901g00006 744 Pfam WD domain, G-beta repeat 687 724 IPR001680 GO:0005515
Vium10901g00006 744 Pfam WD domain, G-beta repeat 601 630 IPR001680 GO:0005515
Vium10901g00006 744 Gene3D - 577 739 IPR015943 GO:0005515
Vium10901g00006 744 MobiDBLite consensus disorder prediction 20 69 - -
Vium10901g00006 744 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 691 726 - -
Vium10901g00006 744 MobiDBLite consensus disorder prediction 20 42 - -
Vium10901g00006 744 Coils Coil 361 381 - -
Vium10901g00006 744 PANTHER PROTEIN SPA1-RELATED 2 54 728 IPR044630 GO:0009640
Vium10901g00006 744 MobiDBLite consensus disorder prediction 471 501 - -
Vium10901g00006 744 SUPERFAMILY WD40 repeat-like 603 727 IPR036322 GO:0005515
Vium10901g00006 744 SMART WD40_4 642 681 IPR001680 GO:0005515
Vium10901g00006 744 SMART WD40_4 596 631 IPR001680 GO:0005515
Vium10901g00006 744 SMART WD40_4 684 724 IPR001680 GO:0005515
Vium10901g00006 744 ProSiteProfiles Protein kinase domain profile. 9 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10901g00006 Vium-Chr10901 26306 30481 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10901g00006 601 725 Miscellaneous Gene Families AT5G08390 29.600 1.77e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Vium10901g00006 WD40 8.2e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10901g00006 K26557 - gmx:100811457 1323.15