Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10901g00005 ATGTGTTGTTGTACTTGGCCTACGTGCAACTCTAGCTGGATGAAGATGGAGGGTTCTTCAGGGTCTGCTTTTCAGAATTCTGGCAGTTCCAGGGCTTTGAACAGTTCTGGAGTCTCGGATAGGAACCAAAGAGTTCATTATCCCGAAAGGAACCCCTTCTCGGGTGAGGCATCTCAGGATTCGGGGTACAAGAAGGAAAGGGAAAGGGTTCCGTTGGGTCAAGGTGATCAGGCAAAAAATTTGGGTGGTGGGTTTTCTGGGTTGTGTGAAGATGAAGTTGAGGTTGACCCGTTTTATGGTGCTGTGGAATGGGGTGATATTAGCTTGAGGCAGTGGTTGGATAAACCAGAACGATCGGTGGATGCCTTTGAATGCTTGCACATATTTAGACAAATAGTAGAAATTGTTAGTGTAGCGCATTCTCAAGGAGTTGTAGTTCATAATGTGAGGCCTTCCTGTTTTGTCATGTCTTCTTTCAACCATATCTCGTTTATTGAATCAGCATCTTGTTCAGATACTGGCTCCGATTCTTTAGGAGAAGGATTAAACGACCAAGGTGGTGAGATCAAAACTCCAACATCTCTCTGTCCCCATGATATGCATCAGCAGAGCTTGGGAAGTGAAGATTTTGTGACTGTCAAGACATCTACAACCACTGCTCGCTCAGATTCTAGTTGCATGCTGTCGAGTGCTGTGTATGCAGCTCGTGCATCTTTGATAGAAGAAACAGAAGAACATAAAATGAAAGATAGGAGGAAGGATGAAGAAGTGGAAGGGAAGAAGCAATCATTTCCAATGAAGCAGATACTGCTAATGGAGATGAGTTGGTACACTAGTCCTGAAGAGGTTGCTGGTGACTCTAGTTCTTGTGCTTCAGATGTTTATCGATTAGGGGTTCTTCTTTTTGAGGTATTTTGTCCGCTAAGCTCGAGAGAAGAAAAGAGTAGAACCATGTCTAGCCTTAGACATAGGGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCCAAAGAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGACCCTAGTAGTCGTCCAACACTGGGGGAGTTGTTGCAGAGTGAGTTCCTTAATGAGCAAAGAGATGATATGGAAGAACGTGAAGCAGCGATAGAGCTGAGACAAAGGATTGAGGATAAGGAGTTGCTGCTAGAATTCCTTTTGTTACTTCAACAGAGGAAACAGGAAGTTGCTGAGAAGTTGCAACACACTATCTCTTTTCTGTGCTCAGATATTGAAGAAGTGACTAAGCAGAAAATTAGATTTAAAGAGATTACTGGTACTGAACTGGGGAGTGATGATCGTTCAGCATCAAGTTTCCCATCAATGACAGTTGTGGACAGTGATGATTCTGCATATGAAGGGACTAGAAAACGAGTCAGACTAGGGACTCATGTTAAAAACAATGAGGAATTTGATGATGATGATGATGATGATGATGATGATGGAGGAGGTGATCAGAAAAGTAACGGAAGTTTTCTTTCAAAAAGTTCTCGGTTAATGAAGAACTTTAAGAAACTCGAGTCAGCATACTTTTTAACACGATGTAGACCGGCGTATTCCTCTGGGAAACTGGTGAGTAGGCATCCTCCTCTAGCAAGTGATGGTAGAGGTTCTGTTGTTTTGACTGAAAGAAGTTGCATCAATGACTTGAAATCAAAAGAGCAGTGCAGGGAGGGTGCAAGTGCTTGGATAAATCCTTTTTTAGAGGGATTGTGCAAGTATTTATCATTCAGCAAGATAAAGGTTAAGGCTGACCTAAAACAAGGGGATCTTTTGCATTCATCCAACCTTGTATGCTCACTCAGTTTTGATCGAGATGGAGAATTTTTTGCTACTGCTGGTGTGAATAAGAAGATTAAAGTGTTCGAATGTGATTCAATCATAAATGATGATCGTGATATCCACTATCCAGTTGTGGAGATGGCTAGCAGGTCAAAGTTAAGCAGTTTATGTTGGAATGCATACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTGCAGTTGTGGGATGTGACAAGAAGCCAAGTACTCTCTGAGATGAGGGAGCACGAGCGGCGCGTCTGGTCCATTGATTTCTCGTCAGCAGATCCAACAATGTTGGCAAGTGGAAGCGATGATGGTTCTGTCAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGAACCATCAAAACCAAGGCAAATGTATGCTGTGTTCAGTTCCCACTGGATTCTTCTCGTTTCCTTGCATTTGGTTCAGCAGATCATAGGATATATTACTATGATCTTCGCAACCTTAAAATGCCACTCTGTACTTTGGTTGGACATAACAAGACTGTCAGCTACATCAAGTTTGTAGACACTGTCAACCTTGTCTCAGCTTCCACAGATAACACTTTGAAGCTTTGGGATTTGTCTACGTGTGCATCCCGAGTTATAGACTCACCGATTCAATCTTTCACAGGTCACGTCAATGTTAAGAACTTTGTGGGATTATCGGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGGTTTTCATATACCACAAAGCCTTCCCAATGCCTGCACTGTCATTCAAGTTTCAGAACACAGACCCTCTTTCCGGTAACGAAGTGGATGACGCGGCGCAATTCGTGTCATCCGTTTGTTGGCGGGGTCAGTCGTCCACCTTGCTCGCTGCAAATTCGACAGGGAATGTCAAAATTCTGGAGATGGTTTAG 2742 0.43 MCCCTWPTCNSSWMKMEGSSGSAFQNSGSSRALNSSGVSDRNQRVHYPERNPFSGEASQDSGYKKERERVPLGQGDQAKNLGGGFSGLCEDEVEVDPFYGAVEWGDISLRQWLDKPERSVDAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGEGLNDQGGEIKTPTSLCPHDMHQQSLGSEDFVTVKTSTTTARSDSSCMLSSAVYAARASLIEETEEHKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYTSPEEVAGDSSSCASDVYRLGVLLFEVFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQRIEDKELLLEFLLLLQQRKQEVAEKLQHTISFLCSDIEEVTKQKIRFKEITGTELGSDDRSASSFPSMTVVDSDDSAYEGTRKRVRLGTHVKNNEEFDDDDDDDDDDGGGDQKSNGSFLSKSSRLMKNFKKLESAYFLTRCRPAYSSGKLVSRHPPLASDGRGSVVLTERSCINDLKSKEQCREGASAWINPFLEGLCKYLSFSKIKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDSIINDDRDIHYPVVEMASRSKLSSLCWNAYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFPLDSSRFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSYIKFVDTVNLVSASTDNTLKLWDLSTCASRVIDSPIQSFTGHVNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFQNTDPLSGNEVDDAAQFVSSVCWRGQSSTLLAANSTGNVKILEMV 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10901g00005 913 Gene3D - 577 913 IPR015943 GO:0005515
Vium10901g00005 913 PANTHER PROTEIN SPA1-RELATED 2 54 913 IPR044630 GO:0009640
Vium10901g00005 913 SMART serkin_6 13 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10901g00005 913 SUPERFAMILY Protein kinase-like (PK-like) 98 366 IPR011009 -
Vium10901g00005 913 ProSiteProfiles Trp-Asp (WD) repeats profile. 691 733 IPR001680 GO:0005515
Vium10901g00005 913 MobiDBLite consensus disorder prediction 20 69 - -
Vium10901g00005 913 PRINTS G protein beta WD-40 repeat signature 795 809 IPR020472 -
Vium10901g00005 913 PRINTS G protein beta WD-40 repeat signature 711 725 IPR020472 -
Vium10901g00005 913 PRINTS G protein beta WD-40 repeat signature 668 682 IPR020472 -
Vium10901g00005 913 MobiDBLite consensus disorder prediction 20 42 - -
Vium10901g00005 913 Pfam WD domain, G-beta repeat 687 724 IPR001680 GO:0005515
Vium10901g00005 913 Pfam WD domain, G-beta repeat 601 630 IPR001680 GO:0005515
Vium10901g00005 913 Pfam WD domain, G-beta repeat 773 808 IPR001680 GO:0005515
Vium10901g00005 913 Coils Coil 361 381 - -
Vium10901g00005 913 MobiDBLite consensus disorder prediction 471 501 - -
Vium10901g00005 913 Gene3D Transferase(Phosphotransferase) domain 1 106 376 - -
Vium10901g00005 913 ProSitePatterns Trp-Asp (WD) repeats signature. 795 809 IPR019775 -
Vium10901g00005 913 ProSiteProfiles Protein kinase domain profile. 9 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10901g00005 913 ProSiteProfiles Trp-Asp (WD) repeats profile. 777 811 IPR001680 GO:0005515
Vium10901g00005 913 SMART WD40_4 642 681 IPR001680 GO:0005515
Vium10901g00005 913 SMART WD40_4 727 766 IPR001680 GO:0005515
Vium10901g00005 913 SMART WD40_4 872 911 IPR001680 GO:0005515
Vium10901g00005 913 SMART WD40_4 770 808 IPR001680 GO:0005515
Vium10901g00005 913 SMART WD40_4 817 856 IPR001680 GO:0005515
Vium10901g00005 913 SMART WD40_4 596 631 IPR001680 GO:0005515
Vium10901g00005 913 SMART WD40_4 684 724 IPR001680 GO:0005515
Vium10901g00005 913 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 574 913 - -
Vium10901g00005 913 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 777 811 - -
Vium10901g00005 913 SUPERFAMILY WD40 repeat-like 601 910 IPR036322 GO:0005515
Vium10901g00005 913 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 691 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10901g00005 Vium-Chr10901 25021 30477 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10901g00005 681 855 Miscellaneous Gene Families AT5G08390 24.294 2.81e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Vium10901g00005 WD40 0.0001 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10901g00005 K26557 - gmx:100811457 1683.31