Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10898g00001 ATGGCTGCCAACACATTGATGAGTTCTGCTATCACAGCTTTCCCTTCTCTCCTTTCTTCCTCAAAATCAAGGTTTACCTCAGCAGTCCCCATTTCCAGCTTTGGCACCAATGTCTCTTCTAGGTTTTCCATGACTGCTGATTGGATGCCTGGCCAGCCTAGACCCCCTTACCTTGATGGTTCAGCACCAGGTGACTTTGGATTCGACCCTCTTCGTCTCGGTGAAGTGCCAGAGAATCTTGAGAGGTTCAAAGAATCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTTCCGGAGGCATTGGGCTTAGGAAACTGGGTAAAGGCTCAGGAATGGGCTGCAGTTCCTGGTGGCCAAGCCACCTACCTAGGAAACCCAGTTCCATGAGGCACACTACCTACCATTCTGGTCATTGAATTCCTTGCTATTTCCTTTGTGGAGCACCAAAGGAGCATGGAGAAAGACCCAGAGAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGATACTCCAAGGACCCTAAAGCATTCCATGAATACAAAGTCAAAGAACTTAAGAATGGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCTGGAACTGGACCTTTGGAGAACTTGGCTACTCACTTGGCTGACCCATGGCACAACAACATCGGAAACATCATTATTCCACAATCGGTTTTGCCTTGA 735 0.4762 MAANTLMSSAITAFPSLLSSSKSRFTSAVPISSFGTNVSSRFSMTADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGNPVPXGTLPTILVIEFLAISFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKAFHEYKVKELKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGNIIIPQSVLP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10898g00001 244 Pfam Chlorophyll A-B binding protein 55 209 IPR022796 -
Vium10898g00001 244 SUPERFAMILY Chlorophyll a-b binding protein 39 238 - -
Vium10898g00001 244 Gene3D Chlorophyll a/b binding protein domain 49 235 - -
Vium10898g00001 244 FunFam Chlorophyll a-b binding protein, chloroplastic 49 235 - -
Vium10898g00001 244 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 44 236 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10898g00001 Vium-Chr10898 16824 19008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10898g00001 1 196 Chloroplast and Mitochondria Gene Families AT3G54890 81.313 2.20e-105 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10898g00001 K08907 - gmx:100305992 464.151