Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10880g00001 ATGGTGGACCACTTCATTGTTTGCATCGATCAGATAATAGCCTCCACGGCCTGTTTTGGATCACTGGATGCGAGAACCTGTGATCATGGAGTTGATCTTATGATACCGGTTTCTGACAATGCTGGAGAAGGGTGTTGCTCTTCTCCAAACAAGTATGATGATGAAGATGTCGTTGAGTGCAGAATATGTCAGGAAGAAGATCAAGTCCAAGCCATGGAGGCACCTTGTTCTTGTAATGGCACTCTCAAGTTTGCTCATAGGAATTGTATCCAGAGATGGTGCAATAAGAAAGGAAATACAATATGTGAAATCTGTAAACAGGAGTTCTCACCAAATTATTCTCTTCCACCAGTCAGAAGCAATGCAATTATGGCAATTGATATAAGGCAAGAATCTGGGAATAATGCTGATATGCATGTTGATCTAGCTTCAGCTGAGCACCAGTTGCTGCAAACTGAGTATGAAGATTATGCCATGTCACAAACCAGTAGCATTGCTTGCCTACGATCTACCACTCTCTTGTTGTTGATAATTTTGCTTGTACGCCAAGCTTTAATGGTCACAAAGAACTCCACAACTGGACAAGATACGTCAATAATCTTTAATCTTGAGATATCACTTCTTCAATTTGCTGGTGTTCTTTTGCCGTGCTATGCAATGGCACGATCCTGGTATGCGATACAAAACCGAAGACGGCAGGTTTAA 705 0.417 MVDHFIVCIDQIIASTACFGSLDARTCDHGVDLMIPVSDNAGEGCCSSPNKYDDEDVVECRICQEEDQVQAMEAPCSCNGTLKFAHRNCIQRWCNKKGNTICEICKQEFSPNYSLPPVRSNAIMAIDIRQESGNNADMHVDLASAEHQLLQTEYEDYAMSQTSSIACLRSTTLLLLIILLVRQALMVTKNSTTGQDTSIIFNLEISLLQFAGVLLPCYAMARSWYAIQNRRRQV 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10880g00001 234 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 233 IPR033275 -
Vium10880g00001 234 CDD RING_CH-C4HC3_MARCH 60 106 - -
Vium10880g00001 234 Pfam RING-variant domain 60 105 IPR011016 GO:0008270
Vium10880g00001 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 111 IPR013083 -
Vium10880g00001 234 ProSiteProfiles Zinc finger RING-CH-type profile. 52 112 IPR011016 GO:0008270
Vium10880g00001 234 Pfam Protein of unknown function (DUF3675) 111 224 IPR022143 -
Vium10880g00001 234 SUPERFAMILY RING/U-box 53 110 - -
Vium10880g00001 234 SMART ringv_2 59 106 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10880g00001 Vium-Chr10880 7793 12872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10880g00001 53 106 C3H Transcription Factor Family AT2G37950 40.323 5.21e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10880g00001 - - gmx:100812120 369.392