Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1087g00001 ATGGAGATGAAAAGCAGTGAAGAGATTGAGATTGGAAGAGACATAACTCCAACTCTCACTCCTCTCTCTTTCTCTCTCCACAATTCCAATCTCACCACTCACTGCTCCGCCTGTTTCTCTCCTCTTTCCAGCCCTTTTCCATCTATTCCCACTCCCCTCTTCTACTGTTCCCCTTCCTGCTCCGCCGCCCTTTCCCCTCTCCACCACTCCTCCGCCGAGATCCACCTCCCTCCCTCCGCCCATTCCTCCCACCTCCGCGCCGCCCTACGCCTCCTCTGCTCCCACCGCCCCTCCTCCTCCTCCCTCCGCCTCGCCGGCCTCCTCTCCAATCGCCCCATCCTCACTTCTCCTCAAACCCCTTCCCTCTCCCATCACGACGACCATGTGTCGGAGGAAATCAAGCTCGACGCCGCCGCCATGGCCGAAGCCATCTCCGAGCAGTGCGCCGTTCCGAACGACGACGCGGTTTTGGAGGAGGCTACGATTGCGTTATGCGCGGTGCTGACGAACGCCGTAGAGGTGCATGATAACGAAGGGCGCGCCCTCGGAATCGCTGTTTATGATCCCACCTTCTCTTGGATCAACCATAGCTGTTCCCCCAACGCATGCTACCGTTTCGTCCTCTCTTCTCCTCCTTCCTCTTCTCTTTCCGATGAACCTGAGCTTCTTCGCATTGCTCCGCATCCAAAAATGGGTAGTGGTGGGGTTTGTGTTAGCAGTAATGAATTTGCCAAAGAGGTGCTGGGTTATGGCCCTAGATTGGTTGTGAGGAGTATCAAGAAAATCAAAAAGGGAGAAGAGGTCACTGTAGCCTATACGGATATCTTACAGCCCAAGGCAACGAGACAGTGGGAGCTATGGTCAAAGTATAGGTTTGTTTGCTGTTGTAAACGATGTAGAGCTCTTCCTTTTTCATACGTGGATCATGCATTGCAAGAAATTTCAGCTTTCAGTTATGATTCAATGGATTCATATTCCAAGTTCCTCAAAGACATGGCTGATAGCAAATTGAGTGAGTGCATTGATGATGTCATATCAGAGTATCTTTTGGTTGGTGATCCTGAGTCTTGTCGTGACAAACTTGAGAAGATACTCATGCAAGGTCTAAATGAGCAGCTAGAAGACGTTAAAGGAAAATCAGATTCTAAGTTCATGCTGCATCCCCTCAACCACCATTCTTTAAAAGCGTACACAACACTGGCTTCAGCGTATAAAGTTTGTGCCAGTGATTTATTGTTTGTAGATTCTGAAATAGATACAAATCAGTTAAAGGCTTTTGACATGAGCAGGACCAGTGCTGCATATTCGCTGTTACTTGCTGGTGCAACTCATCATCTCTTCAATTCTGAATCCTCACTGATTGTTTCTGTTGCAAATTTTTGGATAGGAGCTGGTGAATCCTTGTTATACCTAAGCAGAAGTTCTGGGTGGGGTACGTGTGATAATTTGGGTCTGATTGTTCCAAACCATACTTCAGCCATTAAATTCAAATGGTCGAAGTGTTCATTAGTTGATAGGATTAGAACCTGTGTAGCAAATGGTCAAATTAACAGTGCAGATTTTGAGAATGTATCAAATGAATTTATTTGTTGTGTCTCAGATATTACACAGAAAGTATGGGGTTTTCTTATCTCTGATTGCCCTTTTTTGAGATCCTGTAAAGATCCTATTAATTTCAGTTGGCTAATGTCTACCAAAAGCTCCAATAGAATGGATTTTGAGGTTTGCGTTGACAAAAGTTACAAAACTGAGATCAGTTACACCCACGAACCTGAAAACAGCATCTATATTTGTGAAGAACCAACCTCCACTGATGATGTAGTAGCATGCCTTTTACAGCTTGGTTTACACTGCTTAGCTTATGGGGGATTGTTGGGCAGTATTTGTTATGGTTCCCAGTCTCATGTGGTTTGTCATGTTCAAAACGTTCTAGACCGTGAAAAGAATATTGTTTTATATTCTCGAGAAGAATCTTGA 1977 0.4573 MEMKSSEEIEIGRDITPTLTPLSFSLHNSNLTTHCSACFSPLSSPFPSIPTPLFYCSPSCSAALSPLHHSSAEIHLPPSAHSSHLRAALRLLCSHRPSSSSLRLAGLLSNRPILTSPQTPSLSHHDDHVSEEIKLDAAAMAEAISEQCAVPNDDAVLEEATIALCAVLTNAVEVHDNEGRALGIAVYDPTFSWINHSCSPNACYRFVLSSPPSSSLSDEPELLRIAPHPKMGSGGVCVSSNEFAKEVLGYGPRLVVRSIKKIKKGEEVTVAYTDILQPKATRQWELWSKYRFVCCCKRCRALPFSYVDHALQEISAFSYDSMDSYSKFLKDMADSKLSECIDDVISEYLLVGDPESCRDKLEKILMQGLNEQLEDVKGKSDSKFMLHPLNHHSLKAYTTLASAYKVCASDLLFVDSEIDTNQLKAFDMSRTSAAYSLLLAGATHHLFNSESSLIVSVANFWIGAGESLLYLSRSSGWGTCDNLGLIVPNHTSAIKFKWSKCSLVDRIRTCVANGQINSADFENVSNEFICCVSDITQKVWGFLISDCPFLRSCKDPINFSWLMSTKSSNRMDFEVCVDKSYKTEISYTHEPENSIYICEEPTSTDDVVACLLQLGLHCLAYGGLLGSICYGSQSHVVCHVQNVLDREKNIVLYSREES 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1087g00001 658 SUPERFAMILY SET domain 168 300 IPR046341 -
Vium1087g00001 658 CDD SET_SMYD 154 299 - -
Vium1087g00001 658 Gene3D SET domain 251 299 IPR046341 -
Vium1087g00001 658 Gene3D - 34 79 - -
Vium1087g00001 658 Gene3D SET domain 7 206 IPR046341 -
Vium1087g00001 658 Pfam SET domain 179 272 IPR001214 GO:0005515
Vium1087g00001 658 PANTHER PROTEIN SET DOMAIN GROUP 41 1 649 - -
Vium1087g00001 658 Gene3D - 80 171 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium1087g00001 SET 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1087g00001 - - gmx:100775193 914.45