Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10875g00006 ATGGATTTTCTGGTGGTGGATTCGGACAAGGCAAATGAAACTGAGCGTTGCTGTCTAGAAGAGAGTACAAGTATATTTAAAGGAGTTGAAATCCAAGAGCCTTATGTGGGCATGGAATTTGATTCCGAAGTAGCTGCTAGAAAATTTTATGTTGATTATGCCAGACGGGTTGGATTTGTTGTACGCATAATGCAAAGGCGACGTTCTGGAATTGATGGGAGGACTCTTGCTCGCCGGCTTGGATGTAACAAACAAGGATTCTCACCAAATACCAAGGGGGCATTCGGACCAGAGAAAAAGCCAAGACCTAGTGCCCGTGAAGGTTGCAAGGCCACTATCTTGGTAAAGTTAGAAAAATCTGGAAAATGGGTTGTCACCAGATTTATAAAGGACCACAACCATCCTCTAATTGCTACTGCTAATGGATTCGGCACAGTGGACAACTTTTCACGAAGATCAATAATGGAAATATTGCCAATAGTATTGGACATGAGCGAGATGATAATTGCAGATCACTTACTAAAAGGTTTTATTTTGTATGAGAAAAGGGTAAAAGGGGAAAATGATGCTGTTGTGACTAATAACTGA 588 0.4116 MDFLVVDSDKANETERCCLEESTSIFKGVEIQEPYVGMEFDSEVAARKFYVDYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNTKGAFGPEKKPRPSAREGCKATILVKLEKSGKWVVTRFIKDHNHPLIATANGFGTVDNFSRRSIMEILPIVLDMSEMIIADHLLKGFILYEKRVKGENDAVVTNN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10875g00006 195 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 9 141 - -
Vium10875g00006 195 Pfam FAR1 DNA-binding domain 48 137 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10875g00006 Vium-Chr10875 45334 54002 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium10875g00006 FAR1 1.1e-28 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10875g00006 - - var:108329488 300.056