Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10875g00005 ATGGATTTTCTGGTGGTGGATTCGGACAAGGCAAATGAAACTGAGCGTTGCTGTCTAGAAGAGAGTACAAGTATATTTAAAGGAGTTGAAATCCAAGAGCCTTATGTGGGCATGGAATTTGATTCCGAAGTAGCTGCTAGAAAATTTTATGTTGATTATGCCAGACGGGTTGGATTTGTTGTACGCATAATGCAAAGGCGACGTTCTGGAATTGATGGGAGGACTCTTGCTCGCCGGCTTGGATGTAACAAACAAGGATTCTCACCAAATACCAAGGGGGCATTCGGACCAGAGAAAAAGCCAAGACCTAGTGCCCGTGAAGGTTGCAAGGCCACTATCTTGGTAAAGTTAGAAAAATCTGGAAAATGGGTTGTCACCAGATTTATAAAGGACCACAACCATCCTCTAATTGCTACTGCTAATGGATTCGGCACAGTGGGGTGGCCAGCTACCTAA 456 0.4452 MDFLVVDSDKANETERCCLEESTSIFKGVEIQEPYVGMEFDSEVAARKFYVDYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNTKGAFGPEKKPRPSAREGCKATILVKLEKSGKWVVTRFIKDHNHPLIATANGFGTVGWPAT 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10875g00005 151 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 9 137 - -
Vium10875g00005 151 MobiDBLite consensus disorder prediction 87 106 - -
Vium10875g00005 151 Pfam FAR1 DNA-binding domain 48 137 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10875g00005 Vium-Chr10875 44795 54002 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium10875g00005 FAR1 5.7e-29 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10875g00005 - - var:108329488 301.597