Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10875g00003 ATGGATTTTCTGGTGGTGGATTCGGACAAGGCAAATGAAACTGAGCGTTGCTGTCTAGAAGAGAGTACAAGTATATTTAAAGGAGTTGAAATCCAAGAGCCTTATGTGGGCATGGAATTTGATTCCGAAGTAGCTGCTAGAAAATTTTATGTTGATTATGCCAGACGGGTTGGATTTGTTGTACGCATAATGCAAAGGCGACGTTCTGGAATTGATGGGAGGACTCTTGCTCGCCGGCTTGGATGTAACAAACAAGGATTCTCACCAAATACCAAGGGGGCATTCGGACCAGAGAAAAAGCCAAGACCTAGTGCCCGTGAAGGTTGCAAGGCCACTATCTTGGTAAAGTTAGAAAAATCTGGAAAATGGGTTGTCACCAGATTTATAAAGGACCACAACCATCCTCTAATTGCTACTGCTAATGGATTCGGCACAGTGGGTGATAAAGATAAGAAAATTTCAGAACTTACAATGGAGGTGGAACACCAAGATCAACTTTGTCTTGCATATCGAGAAAAACTGCTCAGCTTCATAAAAAATGTTGAGGAGGAGACACGTGAACTATCCACAAAAGTTCAACTCGTTGTTGAAAATGTAAGGAGAGCTGAATCAGAATTGAAAAAATGTTCACAGAACGTAAAGCCTTGGTGCTTAACCTGA 660 0.4167 MDFLVVDSDKANETERCCLEESTSIFKGVEIQEPYVGMEFDSEVAARKFYVDYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNTKGAFGPEKKPRPSAREGCKATILVKLEKSGKWVVTRFIKDHNHPLIATANGFGTVGDKDKKISELTMEVEHQDQLCLAYREKLLSFIKNVEEETRELSTKVQLVVENVRRAESELKKCSQNVKPWCLT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10875g00003 219 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 9 200 - -
Vium10875g00003 219 Pfam FAR1 DNA-binding domain 48 137 IPR004330 -
Vium10875g00003 219 Coils Coil 178 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10875g00003 Vium-Chr10875 43814 54002 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium10875g00003 FAR1 1.5e-28 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10875g00003 - - var:108329488 442.965