Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10875g00002 ATGGAATTTGATTCCGAAGTAGCTGCTAGAAAATTTTATGTTGATTATGCCAGACGGGTTGGATTTGTTGTACGCATAATGCAAAGGCGACGTTCTGGAATTGATGGGAGGACTCTTGCTCGCCGGCTTGGATGTAACAAACAAGGATTCTCACCAAATACCAAGGGGGCATTCGGACCAGAGAAAAAGCCAAGACCTAGTGCCCGTGAAGGTTGCAAGGCCACTATCTTGGTAAAGTTAGAAAAATCTGGAAAATGGGTTGTCACCAGATTTATAAAGGACCACAACCATCCTCTAATTGCTACTGCTAATGGATTCGGCACAGTGGGTGATAAAGATAAGAAAATTTCAGAACTTACAATGGAGGTGGAACACCAAGATCAACTTTGTCTTGCATATCGAGAAAAACTGCTCAGCTTCATAAAAAATGTTGAGGAGGAGACACGTGAACTATCCACAAAAGTTCAACTCGTTGTTGAAAATGTAAGGAGAGCTGAATCAGAATTGAAAAAATGTTCACAGAACGTAAAGCCTTGGTGCTTAACCTGA 549 0.4153 MEFDSEVAARKFYVDYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNTKGAFGPEKKPRPSAREGCKATILVKLEKSGKWVVTRFIKDHNHPLIATANGFGTVGDKDKKISELTMEVEHQDQLCLAYREKLLSFIKNVEEETRELSTKVQLVVENVRRAESELKKCSQNVKPWCLT 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10875g00002 182 Coils Coil 141 175 - -
Vium10875g00002 182 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 1 163 - -
Vium10875g00002 182 Pfam FAR1 DNA-binding domain 11 100 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10875g00002 Vium-Chr10875 43814 54002 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium10875g00002 FAR1 9.4e-29 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10875g00002 - - var:108329488 368.622