Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10875g00001 ATGGTTAGGAATCAGAAAAGTGTAGTAGCTATGGTTAGCCAGGAGAGAAAGAAGAAGATGAAAAACGAGTCCTATGGGTTTGGGTCCATTTTCATGCATGCCGATGGTAAAGATTTGTTTTTAATGATTTTAGGTACACTTGGGGCTGTTGGGGAAGGCTTTGCCACCCCTCTAGTGTTGTTTATCAGTAGTCGCATGATGAATAACATTGGGAGTTCATCCAACATGCAAGGGAACGCCTTCATCCATAACATCGACAAGAATGCAGTGGCGTGGTTATATTTAGCTGTTTGCTCTTTTGCCGTTTGCTTCCTCGAGGGTTACTGTTGGACGAGAACAAGCGAAAGACAGGCAGCGAGAATGAGATTCAGGTATCTGAAAGCAGTGCTTCGACAAGATATCGCGTACTTCGATATGCATGTCACAAGCACGTCAGAGATCATTACCAGCGTCTCCAACGACAGCCTCGTAATTCAAGATGTTCTCAGTGAAAAAGTTCCGAATTTCTTGATGAACATTTCGTTGTTCGTTGGGAGCTACATAGCGGCGTTTGCAATGTTGTGGAGGCTGGCCATTGTGGGGTTTCCTTTCGTGGTTCTTCTGGTGATCCCGGGTTTAATTTACGGCAAGACCTTGTTGGGGTTGTCTAGTAAAATCAGAGATGAGTATAATGAAGCAGGAACAGTTGTGGAACAAGCAATTTCATCAATCAGAACCGTTTATTCCTTCGTTGGGGAAAGCCAGACCTTGAACACTTTCTCAAACGCGCTTCAAGGGACGGTGAAGTTGGGCCTGAAGCAAGGCTGGGCAAAAGGCTTAGCCATTGGTAGCAACGGCGTCGTTTTCGCCATTTGGTCTTTCATGTCCTATTACGGCAGCAGACTCGTTATTTATCATGGCGTCAAAGGAGGGACAGTTTTCGCCGTTGGAGCAGCAATAGCTGTTGGTGGATTGGGACTGGGAGCGGCTTTAGCGAATGTGAAGTTCTTTTCGGAGGCGGGTGCGGCGGCGGAGCGTATAAAGCAGGTGATAAAGAGGGTTCCGAGGATTGATTCTGAGAGCGAGGAAGGGGAGATTCTGGAGAGAGTTAACGGGGAAGTTGAATTTGACAGGGTGGAATTTGTGTACCCGTCGAGACTAGAGAGTCCAGTATTGAACGGGTTGAGTGTGAGAATTCCGGCAGGGAAGAGAGTGGCGTTGGTTGGGGAGAGTGGGTCGGGGAAGTCGACGGTGATAGCGCTTTTGCAGAGGTTCTATGACCCAATGGGAGGAGAGGTGCGTTTGGATGGGGTAGGGATTCAGAAGTTGCAGGTCAAATGGTTGCGTTCGCAGATGGGGTTGGTGAGCCAGGAGCCTGCTCTGTTCGCCACAACCATTAAAGAGAACATACTTTTCGGCAGAGAGGATGCCACGGAGGACCAAGTTATTGAGGCTGCAAAAGCTGCGCATGCTCATGATTTCATCTCGCTTCTGCCTCACGGTTACCAAACACAGGTGGGAGAGAGGGGAATTCAGATGTCTGGGGGACAGAAACAGAGGATAGCGATTGCGAGGGCAATAATCAAGAAACCGCGAATTCTACTTCTGGACGAAGCAACAAGCGCGCTAGACACAGAATCCGAGCATCTCGTCCAACAGGCACTGGACAACGCCGCCGCGGGTTGCACCGCTATCATCATCGCCCACCGTTTATCCACTATCCAGAACGCAGACCTCATCGTCGTCGTCGCGGGCGGAAAGGTAATAGAGATGGGCTCGCACGACGAGCTCCTCGAAAACGACACCAGCGCCTACGCCTCCTCTTTCCGCCTCCAGCAACAAACGGAGAAAGAGAAAGTAGCCGAAAGCGAGGAAAACGTTGCTCCAAGGAGTGTCACGAGCACGTCATCCACGACAGACATGGAAAACGCGCTCCCGGTGGGGCCAGTTGGTGGGAGTGGTACGGACGTGGCGGAAGGGAAGAAGATACCGGCGCCGTCGTTTCACAGATTGGTATCCCTGAGTCTCCCCGAGTGGAAACACGTGCTTGTGGGGTGCTTAAACGCGATGGTGTTCGGTGCCGTTCAGCCAGTTTACGCATTCACTATGGGGTCCACGATACTGTTGTATTTTCACGCGGATCATGAGGAGATAGCGAGGAAGACTAGGATCTACTCGTTCGCCTTTCTGGGCCTGTTTGTGGTGTCTTTCATTGCAAATGTTGGGCAGCATTATTGTTTCGCCTACATGGGGGAATACTTGACCAAAAGGGTCAGAGAGACCGTGCTTTCGAAAATCCTCACTTTCGAAATTGGATGGTTTGATTTGGACGAAAACTCCAGTGGCGCCATCTGTTCCAGGCTTGCCAAAGACGCCAATGTGGTAAGGTCTCTAGTGGGAGATAGAATGGCATTGCTGGTACAGACATTTTCAGCGGTGATAACAGCTTACACAATGGGTCTGATAATTTCCTGGAAGCTTTCCATTGTTATGATAGCGGTACAACCTATCATCATAGGTTGCTTTTACACAAGGCGTGTCCTTCTCAAGAGCATGTCCAACATGTCCCTGAAGGCCCAGCAACAAAGCAGCAAACTGGCATCAGAAGCGGTTTCCAATCTCCGAACCGTCACAGCCTTTTCTTCGCAGCACCGGATTCTCAAAATGCTTGAAGCGGCCCAAGAGGGTCCAAGCAGAGAGAACATTCGGCAGTCGTGGTTTGCTGGCATGGGGCTTGGATTCTCCCAAGGCCTTGCATCTTGCGTTTGGGCCCTAGATTTTTGGTACGGTGGCAAGCTCATCTCGAACGGGCACATAACAACAAAAGCGTTCTTTGAGAGCTTCATGGTTTTGGTGAGCACTGGGAGGATAATTGCGGATGCGGGAAGCATGACAACGGATCTTGCTAGAGGTGCTGATGTTGTGGCCTCTACTTTTGGCATCATAGATAGGAGTACGAAAATAGAGCCTGATGACCAAAACGGGTACAAGGCAGAAAAGTTGGTTGGTGAAATAGAGTTTCATGAGGTTCATTTTTCGTACCCTACAAGGCCTGATGTGGCTATCTTCCAGGGGTTCTCGATGAAAATGGAGGCAGGAAAATCAACCGCGTTGGTGGGGCAAAGTGGATCTGGAAAATCAACGATCATAGGGCTAATAGAGAGATTTTACGATCCACTTAGAGGGATGGTGACAATAGATGGAATGGACATAAGATGGTATAACCTAAAGTCACTAAGGAAGCACATAGCACTTGTGAGCCAGGAGCCAACGTTGTTTGGTGGGACCATAAGAGAGAACATTATATATGGAAGAGGTGGGAGGGTTGATGAGAGTGAGATGATAGAGGCAGCACGAGCAGCCAACGCTCATGATTTCATAGCGGGTCTGAAGGAGGGGTACGAGACATGGTGTGGGGAAAAAGGGGTACAACTTTCAGGGGGTCAAAAGCAAAGGATAGCAATAGCGAGGGCCATATTGAAAAACCCTAAGGTGTTGCTGTTGGACGAGGCCACAAGTGCATTGGATGGTCAATCAGAGAAGGTGGTGCAAGATACGTTGATGAGGGTAATGATAGGGAGGACCAGCGTGGTGGTGGCACACAGGTTGAGCACCATTCACCATTGTGATACTATTGCTGTGATGGAAAAGGGGAGGGTGGTGGAGACTGGAACCCACTCCTCCTTGTTGGCCAAAGGACCATGTGGAGCTTATTACTCTTTGGTGAGCCTTCAGACTAGACATGCAGCCACACTCAACAACACTTGTACTAAAGCTACCCACTCTGTCACTTGA 3774 0.4944 MVRNQKSVVAMVSQERKKKMKNESYGFGSIFMHADGKDLFLMILGTLGAVGEGFATPLVLFISSRMMNNIGSSSNMQGNAFIHNIDKNAVAWLYLAVCSFAVCFLEGYCWTRTSERQAARMRFRYLKAVLRQDIAYFDMHVTSTSEIITSVSNDSLVIQDVLSEKVPNFLMNISLFVGSYIAAFAMLWRLAIVGFPFVVLLVIPGLIYGKTLLGLSSKIRDEYNEAGTVVEQAISSIRTVYSFVGESQTLNTFSNALQGTVKLGLKQGWAKGLAIGSNGVVFAIWSFMSYYGSRLVIYHGVKGGTVFAVGAAIAVGGLGLGAALANVKFFSEAGAAAERIKQVIKRVPRIDSESEEGEILERVNGEVEFDRVEFVYPSRLESPVLNGLSVRIPAGKRVALVGESGSGKSTVIALLQRFYDPMGGEVRLDGVGIQKLQVKWLRSQMGLVSQEPALFATTIKENILFGREDATEDQVIEAAKAAHAHDFISLLPHGYQTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDTESEHLVQQALDNAAAGCTAIIIAHRLSTIQNADLIVVVAGGKVIEMGSHDELLENDTSAYASSFRLQQQTEKEKVAESEENVAPRSVTSTSSTTDMENALPVGPVGGSGTDVAEGKKIPAPSFHRLVSLSLPEWKHVLVGCLNAMVFGAVQPVYAFTMGSTILLYFHADHEEIARKTRIYSFAFLGLFVVSFIANVGQHYCFAYMGEYLTKRVRETVLSKILTFEIGWFDLDENSSGAICSRLAKDANVVRSLVGDRMALLVQTFSAVITAYTMGLIISWKLSIVMIAVQPIIIGCFYTRRVLLKSMSNMSLKAQQQSSKLASEAVSNLRTVTAFSSQHRILKMLEAAQEGPSRENIRQSWFAGMGLGFSQGLASCVWALDFWYGGKLISNGHITTKAFFESFMVLVSTGRIIADAGSMTTDLARGADVVASTFGIIDRSTKIEPDDQNGYKAEKLVGEIEFHEVHFSYPTRPDVAIFQGFSMKMEAGKSTALVGQSGSGKSTIIGLIERFYDPLRGMVTIDGMDIRWYNLKSLRKHIALVSQEPTLFGGTIRENIIYGRGGRVDESEMIEAARAANAHDFIAGLKEGYETWCGEKGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDGQSEKVVQDTLMRVMIGRTSVVVAHRLSTIHHCDTIAVMEKGRVVETGTHSSLLAKGPCGAYYSLVSLQTRHAATLNNTCTKATHSVT 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10875g00001 1257 MobiDBLite consensus disorder prediction 620 636 - -
Vium10875g00001 1257 Gene3D ABC transporter type 1, transmembrane domain 968 1242 IPR036640 GO:0005524|GO:0016020
Vium10875g00001 1257 FunFam Putative ABC transporter B family member 8 644 986 - -
Vium10875g00001 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 682 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium10875g00001 1257 CDD ABC_MTABC3_MDL1_MDL2 367 605 - -
Vium10875g00001 1257 Gene3D ABC transporter type 1, transmembrane domain 30 964 IPR036640 GO:0005524|GO:0016020
Vium10875g00001 1257 MobiDBLite consensus disorder prediction 608 643 - -
Vium10875g00001 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 605 IPR027417 -
Vium10875g00001 1257 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524|GO:0016887
Vium10875g00001 1257 PANTHER ABC TRANSPORTER B FAMILY 13 734 IPR039421 -
Vium10875g00001 1257 FunFam ABC transporter B family member 4 357 612 - -
Vium10875g00001 1257 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 981 - -
Vium10875g00001 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 367 603 IPR003439 GO:0005524
Vium10875g00001 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 998 1235 IPR003439 GO:0005524
Vium10875g00001 1257 Pfam ABC transporter 385 534 IPR003439 GO:0005524
Vium10875g00001 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 332 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium10875g00001 1257 ProSitePatterns ABC transporters family signature. 506 520 IPR017871 GO:0005524|GO:0016887
Vium10875g00001 1257 SUPERFAMILY ABC transporter transmembrane region 36 351 IPR036640 GO:0005524|GO:0016020
Vium10875g00001 1257 CDD ABC_MTABC3_MDL1_MDL2 998 1238 - -
Vium10875g00001 1257 FunFam ABC transporter B family member 4 988 1245 - -
Vium10875g00001 1257 Pfam ABC transporter 1017 1166 IPR003439 GO:0005524
Vium10875g00001 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1238 IPR027417 -
Vium10875g00001 1257 SMART AAA_5 394 588 IPR003593 GO:0016887
Vium10875g00001 1257 SMART AAA_5 1025 1212 IPR003593 GO:0016887
Vium10875g00001 1257 CDD ABC_6TM_Pgp_ABCB1_D1_like 42 340 - -
Vium10875g00001 1257 Pfam ABC transporter transmembrane region 42 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium10875g00001 1257 Pfam ABC transporter transmembrane region 676 946 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium10875g00001 1257 FunFam ABC transporter B family member 1 29 366 - -
Vium10875g00001 1257 SUPERFAMILY ABC transporter transmembrane region 662 982 IPR036640 GO:0005524|GO:0016020
Vium10875g00001 1257 Gene3D - 988 1239 IPR027417 -
Vium10875g00001 1257 Gene3D - 357 606 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10875g00001 Vium-Chr10875 7231 15317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10875g00001 47 613 Calmodulin-binding Proteins AT2G36910 36.979 4.97e-100 345