Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10862g00002 ATGTCTGTGCCATTGGAACAAGGCTATGTAGGGTTATCAGAGGTTTCTGCAATGGAAAGTTCTGACAAGTTTTCTACTAGTGCTGGCTTGAACCTCAAGGCTACTGAGCTGAGGCTTGGTTTACCAGGTTCCGAGTCACCGGAGAGAGATGGGGGTGTGGAAGAAAAAAATGGGCACCCTTTAGGCATGGTCAAGAATTTGGTGTCTGGGGCCAAGAGGGGTTTCTCAGACACCATTGATGGGGGTTCTGGGAAATGGCTTCTCTCAGGGAATGGTGGATCTGAGGTGGATTTGGGAAAAGATTGTGGCTTGTTCTCACCAAGGGGTATTGGTGCTGGTGCTGCCAAGGCTGAGTCTGCCAACCAACAAATTTCTGTTGTAAAAGATAAAGTTCCTCTGCCTCCAAAACCGTTGAATGAGAAGAAACCTCAGATATCTGCTCCTGCTGCAAAGGAACAGGTTGTGGGATGGCCACCAATTCGATCTTTCAGGAAGAACTCAATGGCCACTCAGCCTCAGAAGAATGATGATGATGCAGAAGCCAAGTCAGGGTGCCTTTATGTGAAAGTTAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTCAAAAACTTTGCCACTTACATGGAACTGTCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCAGACAATGTGGTTCTCATGGAGTTTCTGGTCGAGATAAGTTGAGTGAAAGTAGATTGATGGATCTGCTTCATGGTTCAGAATATGTTCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTGGCTCATGCAAGAGGCTGAGGATAATGAAAAGTTCTGAAGCAATTGGACTAGCACCAAGAGCAATGGAAAAATGCAAAAGTCGCAACTAG 918 0.4553 MSVPLEQGYVGLSEVSAMESSDKFSTSAGLNLKATELRLGLPGSESPERDGGVEEKNGHPLGMVKNLVSGAKRGFSDTIDGGSGKWLLSGNGGSEVDLGKDCGLFSPRGIGAGAAKAESANQQISVVKDKVPLPPKPLNEKKPQISAPAAKEQVVGWPPIRSFRKNSMATQPQKNDDDAEAKSGCLYVKVSMDGAPYLRKVDLKNFATYMELSSALEKMFSCFTIRQCGSHGVSGRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTGSCKRLRIMKSSEAIGLAPRAMEKCKSRN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10862g00002 305 MobiDBLite consensus disorder prediction 39 60 - -
Vium10862g00002 305 ProSiteProfiles PB1 domain profile. 185 287 IPR000270 GO:0005515
Vium10862g00002 305 MobiDBLite consensus disorder prediction 130 151 - -
Vium10862g00002 305 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 30 292 IPR003311 GO:0005634|GO:0006355
Vium10862g00002 305 Gene3D - 179 299 - -
Vium10862g00002 305 SUPERFAMILY CAD & PB1 domains 182 286 - -
Vium10862g00002 305 FunFam Auxin-responsive protein 180 297 - -
Vium10862g00002 305 Pfam AUX/IAA family 35 296 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10862g00002 Vium-Chr10862 22647 25556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10862g00002 187 303 B3 DNA Binding Superfamily AT1G19850 31.624 1.82e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium10862g00002 AUX_IAA 6.3e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10862g00002 K14484 - gmx:100803754 513.842