Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10862g00001 ATGTCTGTGCCATTGGAACAAGGCTATGTAGGGTTATCAGAGGTTTCTGCAATGGAAAGTTCTGACAAGTTTTCTACTAGTGCTGGCTTGAACCTCAAGGCTACTGAGCTGAGGCTTGGTTTACCAGGTTCCGAGTCACCGGAGAGAGATGGGGGTGTGGAAGAAAAAAATGGGCACCCTTTAGGCATGGTCAAGAATTTGGTGTCTGGGGCCAAGAGGGGTTTCTCAGACACCATTGATGGGGGTTCTGGGAAATGGCTTCTCTCAGGGAATGGTGGATCTGAGGTGGATTTGGGAAAAGATTGTGGCTTGTTCTCACCAAGGGGTATTGGTGCTGGTGCTGCCAAGGCTGAGTCTGCCAACCAACAAATTTCTGTTGTAAAAGATAAAGTTCCTCTGCCTCCAAAACCGTTGAATGAGAAGAAACCTCAGATATCTGCTCCTGCTGCAAAGGAACAGGTTGTGGGATGGCCACCAATTCGATCTTTCAGGAAGAACTCAATGGCCACTCAGCCTCAGAAGAATGATGATGATGCAGAAGCCAAGTCAGGGTGCCTTTATGTGAAAGTTAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTCAAAAACTTTGCCACTTACATGGAACTGTCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCAGACAATGTGGTTCTCATGGAGTTTCTGGTCGAGATAAGTTGAGTGAAAGTAGATTGATGGATCTGCTTCATGGTTCAGAATATGTTCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTGGCTCATGCAAGAGGCTGAGGATAATGAAAAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAATGCAAAAGTGGCAACTAG 918 0.4564 MSVPLEQGYVGLSEVSAMESSDKFSTSAGLNLKATELRLGLPGSESPERDGGVEEKNGHPLGMVKNLVSGAKRGFSDTIDGGSGKWLLSGNGGSEVDLGKDCGLFSPRGIGAGAAKAESANQQISVVKDKVPLPPKPLNEKKPQISAPAAKEQVVGWPPIRSFRKNSMATQPQKNDDDAEAKSGCLYVKVSMDGAPYLRKVDLKNFATYMELSSALEKMFSCFTIRQCGSHGVSGRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTGSCKRLRIMKSSEAIGLAPRAMEKCKSGN 305
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium10862g00001 305 MobiDBLite consensus disorder prediction 39 60 - -
Vium10862g00001 305 ProSiteProfiles PB1 domain profile. 185 287 IPR000270 GO:0005515
Vium10862g00001 305 MobiDBLite consensus disorder prediction 130 151 - -
Vium10862g00001 305 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 30 292 IPR003311 GO:0005634|GO:0006355
Vium10862g00001 305 SUPERFAMILY CAD & PB1 domains 182 286 - -
Vium10862g00001 305 FunFam Auxin-responsive protein 180 297 - -
Vium10862g00001 305 Gene3D - 179 298 - -
Vium10862g00001 305 Pfam AUX/IAA family 35 296 IPR033389 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium10862g00001 Vium-Chr10862 14640 25561 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10862g00001 187 304 B3 DNA Binding Superfamily AT1G19850 31.356 1.62e-08 53.9
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium10862g00001 AUX_IAA 6.3e-89 CL0072