Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10857g00005 ATGGACCAACCGCCGCACCACCACAGCAGCGCCGCCACTACCTCCGCCGATAAGCCCGCCACGCAGCGAGGCGGCACGCGTCACCCGCTCTTCCGCGGCGTCCGCAAGCGCCGCTGGGGAAAATGGGTGTCCGAAATCCGGGAGCCGCGCAAGAAGTCGCGCATATGGCTCGGCTCCTTCCCGGCACCGGAGATGGCGGCGAAGGCCTACGATGTCGCAGCCTACTGCCTCAAGGGCCGCAAGGCGCAGCTCAATTTCCCCGACGAGGTCCACCGCCTCCCGCCGCTCCCTTCCGCCTGCACCGCCCGCGACATCCAGGCCGCCGCCGCCAAGGCGGCCCACATGATGATAGTCCAGGCCGCCGCCGCCGCCCCCGACTCTCCGGAGAAGAGCAGCATTACCTCCGGCTGCGGCCACGCAGCCGATGACTTCTGGCGAGAAATTGAGCTGCCGGAGCTCCTCCACAGCAAGTGGTGGACCTCTTCCGCCGACTCGTCGCCATGGACGGAGGATGACCTTCCGCCGCAGCAACCCTTCACCACGGCGTGCTTGTAG 555 0.6829 MDQPPHHHSSAATTSADKPATQRGGTRHPLFRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPPLPSACTARDIQAAAAKAAHMMIVQAAAAAPDSPEKSSITSGCGHAADDFWREIELPELLHSKWWTSSADSSPWTEDDLPPQQPFTTACL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10857g00005 184 MobiDBLite consensus disorder prediction 1 21 - -
Vium10857g00005 184 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Vium10857g00005 184 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Vium10857g00005 184 PRINTS Ethylene responsive element binding protein signature 69 89 IPR001471 GO:0003700|GO:0006355
Vium10857g00005 184 FunFam Ethylene-responsive transcription factor 2 29 88 - -
Vium10857g00005 184 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Vium10857g00005 184 MobiDBLite consensus disorder prediction 1 32 - -
Vium10857g00005 184 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Vium10857g00005 184 MobiDBLite consensus disorder prediction 162 184 - -
Vium10857g00005 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 157 - -
Vium10857g00005 184 SUPERFAMILY DNA-binding domain 30 89 IPR016177 GO:0003677
Vium10857g00005 184 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
Vium10857g00005 184 CDD AP2 29 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10857g00005 Vium-Chr10857 37674 38481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10857g00005 2 184 AP2-EREBP Transcription Factor Family AT1G01250 52.660 3.27e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium10857g00005 AP2 7.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10857g00005 K09286 - gmx:100802845 291.967