Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium10852g00005 | ATGGACGACGCCAGGCCCACCTTTGTGTGGGGCACTAACATAAGCGTGGAAGACGTGAACGATGCGATTCACAGGTTTTTGAGGGACTTTAGGGAAGCGTCTTCGTCGCAGGGTGAGGATGACGGGTTGAACTTGCACACCGAAGGGAAGTATGAGAAATTGATCAGACAGGTTATTGAAGTTGAAGGAGATTCTCTTGACGTTAATGCGCGTGACGTGTTTGATCATGACCCTGATTTGTACACCAAGATGGTTAGATACCCTCTTGAGGTGCTTGCTATCTTTGACTTGGTTTTGATGAATATGGTTAGCCGATTGAAGCCGATGTTTGAGAAGCACATTCAAACTCGGATTTTCAATCTCAAACACTCAACCTCAATGAGAAATTTGAACCCTTCTGATATTGAGAGGATGGTGTCATTGAAAGGAATGATTATAAGGTGTAGTTCAATTATACCTGAAATTAGGGAAGCCATATTTAGGTGTCTTGTGTGTGGATTTTGCTGTGACCCAATTCCTGTGGAGAGAGGACGAATAACGGAGCCCACTAGATGTCTGAGGGAAGAATGTCAATCCAGGAACTCCATGACACTTGTTCACAACCGATGCAGGTTTACTGATAAGCAAATTGTGAGGCTCCAGGAGACACCTGACCAGATACCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGCTACATGATAAGCTGGTGGATACTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATCTATAGGGCTATGAGTGTTAGGGTTGGGCCAACTCAGAGGACTGTTAAGTCATTGTTCAAGACATATATTGATTGTCTTCACATAAAGAAGACCGATAAGTCTAGGATGCAGGTAGAGGACGCTATGGATATTGATAGTGGCCCTGGCAGAAATGAAGAGGAAGTTGTCTTTGAAGAAGATAAAGTGGCTCGATTGAAGGAGATCTCGAAACGGCCAGATATATATGAAATACTGACAAAGTCATTGGCACCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGTCTTCTTTGTCAGCTTTTTGGTGGAAATGCATTGAAATTGGCTTCTGGTGCCAGCTTCCGTGGTGATATAAATATTCTCCTAGTTGGTGATCCTGGGACTAGCAAGTCCCAGCTACTCCAATACATACACAAACTATCTCCACGTGGCATTTACACCAGCGGAAGGGGAAGCTCTGCAGTTGGATTGACAGCATATGTAGCCAAGGACCCTGAAACAGGAGAAACTGTTCTTGAGAGTGGTGCCCTTGTTTTGAGTGACCGAGGTATCTGTTGTATTGATGAATTTGACAAAATGTCTGAAAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGTATAATTGCTTCCCTCAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGTTCAAGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCGCCCACACTTCTGTCCAGGTTTGATTTAATCTACTTGATCCTTGACAAGGCTGATGAGCAAACTGATAGGCGCCTTGCTAAACATATTGTGTCCCTACACTTCGACAATCCCGAGAATATGGAGCAGGATGTGTTGGATCTTTCTACATTAACAGATTATGTTAGCTATGCCCGGAAGTACATACACCCTCAACTTTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTACGTGGAAATAAGGAAAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCAACGCCGAGGCAGATTGAGAGTGTGATTCGTCTAAGTGAAGCATTGGCTCGTATTCGCTTTTCGGAATGGGTCGAAAAGAATGATGTAACGGAGGCTTTCAGGCTTTTGGAAGTTGCAATGCAGCAGTCTGCAACGGATCACTCTACTGGAACCATTGATATGGATCTTATTACTACTGGAGTGTCGGCAAGTGAGAGGATAAGACGAGAAAGTTTGTTGCAAGCAACACGCAACTTAATCATGGAGAAGATGCAGATTGGGGGACCTTCTATGCGGTTATTAGAGTTATTGGAAGAATTGAAGAAACAGGAGACTGGTGTTAGCGAAGTTCATCTCAATGATCTAAGAAATGCAATAGCTACCCTGGCTACCGAAGGATTTGTTAGCATGCACGGTGACAGCCTAAAAAGATCTTAA | 2214 | 0.439 | MDDARPTFVWGTNISVEDVNDAIHRFLRDFREASSSQGEDDGLNLHTEGKYEKLIRQVIEVEGDSLDVNARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSRLKPMFEKHIQTRIFNLKHSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGFCCDPIPVERGRITEPTRCLREECQSRNSMTLVHNRCRFTDKQIVRLQETPDQIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMQVEDAMDIDSGPGRNEEEVVFEEDKVARLKEISKRPDIYEILTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPENMEQDVLDLSTLTDYVSYARKYIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESVIRLSEALARIRFSEWVEKNDVTEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERIRRESLLQATRNLIMEKMQIGGPSMRLLELLEELKKQETGVSEVHLNDLRNAIATLATEGFVSMHGDSLKRS | 737 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium10852g00005 | 737 | Gene3D | - | 13 | 121 | - | - | |
| Vium10852g00005 | 737 | Gene3D | - | 310 | 644 | IPR027417 | - | |
| Vium10852g00005 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 427 | 441 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium10852g00005 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 506 | 514 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium10852g00005 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 479 | 491 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium10852g00005 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 455 | 468 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium10852g00005 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 367 | 382 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium10852g00005 | 737 | CDD | MCM4 | 329 | 638 | - | - | |
| Vium10852g00005 | 737 | SMART | mcm | 123 | 640 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium10852g00005 | 737 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 337 | 652 | IPR027417 | - | |
| Vium10852g00005 | 737 | FunFam | DNA helicase | 154 | 206 | - | - | |
| Vium10852g00005 | 737 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 20 | 691 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium10852g00005 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 200 | 212 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vium10852g00005 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 640 | 649 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vium10852g00005 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 149 | 162 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vium10852g00005 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 488 | 505 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vium10852g00005 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 342 | 353 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vium10852g00005 | 737 | SUPERFAMILY | Nucleic acid-binding proteins | 44 | 277 | IPR012340 | - | |
| Vium10852g00005 | 737 | ProSitePatterns | MCM family signature. | 435 | 443 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Vium10852g00005 | 737 | ProSiteProfiles | MCM family domain profile. | 326 | 532 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium10852g00005 | 737 | Gene3D | - | 154 | 206 | - | - | |
| Vium10852g00005 | 737 | Pfam | MCM P-loop domain | 314 | 536 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium10852g00005 | 737 | Pfam | MCM AAA-lid domain | 552 | 638 | IPR041562 | - | |
| Vium10852g00005 | 737 | Gene3D | - | 645 | 730 | IPR036388 | - | |
| Vium10852g00005 | 737 | Pfam | MCM OB domain | 127 | 256 | IPR033762 | - | |
| Vium10852g00005 | 737 | FunFam | DNA helicase | 307 | 645 | - | - | |
| Vium10852g00005 | 737 | Pfam | MCM N-terminal domain | 22 | 120 | IPR027925 | - | |
| Vium10852g00005 | 737 | Gene3D | - | 127 | 266 | IPR012340 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium10852g00005 | Vium-Chr10852 | 24069 | 29527 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium10852g00005 | 6 | 736 | Core DNA Replication Machinery Family | AT2G16440 | 77.869 | 0.0 | 1187 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium10852g00005 | K02212 | - | gmx:100782586 | 1337.4 |