Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10852g00004 ATGGGAGAGGTAGCGCGCAGAGGATGTTGTCCTCCGATGGATCTGTTTCGTTCGGAGCCGATGCAACTGGTTCAGCTCATCATCCCAATCGAATCCGCTCACCGCACTGTCTCCTACCTCGGCGACCTTGGCCTTCTTCAGTTCAAAGATCTCAATGCAGATAAGAGTCCTTTTCAGCGAACATATGCAACTCAGATAAAAAGATGTGGAGAGATGGCTCGGAGACTGCGTTTCTTCAAGGAGCAAATGTTGAAGGCAGGTGTTTCACCAAAATATTCCACAACACCAGTTGATGTGAACATTGATGACCTTGAGGTAAAACTTACAGAAATTGAGTCAGAGTTAGTTGAGATGAACGCAAATGGTGAGAAGTTGCAACGTTCATACAATGAGCTTGTGGAGTATAAGCTTGTTTTACAGAAGGTACTGTGCCTATAA 438 0.4521 MGEVARRGCCPPMDLFRSEPMQLVQLIIPIESAHRTVSYLGDLGLLQFKDLNADKSPFQRTYATQIKRCGEMARRLRFFKEQMLKAGVSPKYSTTPVDVNIDDLEVKLTEIESELVEMNANGEKLQRSYNELVEYKLVLQKVLCL 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10852g00004 145 Coils Coil 101 128 - -
Vium10852g00004 145 PANTHER VACUOLAR PROTON ATPASES 15 142 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vium10852g00004 145 Pfam V-type ATPase 116kDa subunit family 39 142 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10852g00004 Vium-Chr10852 18747 20846 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10852g00004 13 141 Primary Pumps ATPases(2) AT4G39080 73.846 8.67e-61 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10852g00004 K02154 - vum:124820150 290.041