Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10852g00003 ATGGATGTTCACCTGCAGACTGAGAAAAATGTTTTTGTGATCTTCTATGCTGGAGAAAAAGCAAAAGCCAAGATTCTCAAAATATGTGAAGCCTTTGGTGCTAATCGTTACCCTTTTGCTGAGGAACTTGGAAAACAAGCACAAATGATCACAGAGGTTTCTGGAAGACTTTTGGAATTGAAGACCACTATAGATGCTGGACTACATCACCGGGATCACTTGCTAAATACTATTGGGGTTCAATTTGAGCAATGGGATGTTCTGGTGAGGAAGGAGAAATCTATTCATCATACCCTGAACATGCTGAGCCTTGATGTGACGAAAAAATGTCTTGTGGCTGAGGGGTGGAGTCCCATCTTTGCAAATAAGCAGATCCAGGATGCATTACAGCGGGCAGCATTGGACTCTAATTCTCAAGTCAATGCCATTTTTCAAGTTCTGCATACCAGGGAGTTGCCGCCTACCTTTTTCCGCACAAATAAATTTACTTCTTCTTTTCAAGGAATCATTGATTCATATGGGGTTGCTAAGTATCAGGAGGCAAATCCGACCGTGTATACTGTAGTTACCTTTCCGTTTCTTTTTGCTGTTATGTTTGGCGATTGGGGACATGGAATATGTTTACTACTTGCAGCTCTATATTTCATAATCAGGGAGAAGAAACTATCTAGTCAGAAGCTTGATGACATCACGGAGATGACTTTTGGAGGTCGTTATGTTATTTTGCTGATGGCGCTGTTCTCAATCTACACTGGCTTTATCTATAACGAGTTCTTTTCTGTTCCATTTGCACTCTTTGCCCCCTCTGCTTATGATTGTCGTGACCTCTCTTGCAGGGATGCTACAACAGTGGGCTTGATAAAAGTGCGGGACTCTTATCCTTTCGGAGTTGATCCTGTATGGCATGGAACACGAAGTGAACTACCATTTCTGAACTCATTGAAAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTGTGATGAGCTATTGCAATGCCATATTCTTTAGAAACAGGGTGAATGTGTGGTTCCAGTTCATTCCCCAGATGATATTTCTCAACAGTCTATTTGGCTATCTAGCCCTTCTTATTATTGTGAAGTGGTGTACTGGTTCTCAAGCTGATTTGTACCATATTTTGATCTACATGTTCCTTAGCCCGACTGATGATTTGGGTGAGAACCAACTCTTTGTTGGTCAGAAGAATTTGCAGCTTGTGCTTTTGCTTCTGGCATTTATCTCTGTCCCCTGGATGCTGTTGCCAAAACCTTTTATCTTAAAGAAGCAACATGAAGCTAGGCACGGGGCTGAATCCTATACACCACTTGAAAGCACAGACGAGAGCTTGCAACCGGAGTCAAACCACGAATCCCATGGTCATGAGGAATTTGAGTTCAGTGAAGTCTTTGTACATCAACTTATACATACCATTGAATTTGTGCTTGGAGCAGTGTCTAATACGGCTTCTTACCTCCGTCTATGGGCCCTTAGTCTTGCTCATTCAGAATTATCAAGTGTATTCTACGAGAAGGTTCTGCTGATGGCATGGGGGTACAATAATGTGATAATCTTGATAGTGGGTCTCATTGTTTTCATCTTCGCTACAGTCGGAGTGTTACTTGTCATGGAAACACTTAGTGCCTTCTTGCATGCGTTACGACTTCACTGGGTGGAGTTTCAAAACAAGTTTTACGAGGGCGATGGTTACAAGTTCCACCCTTTCTCGTTCTCCTTACTGGATGATGAGGAATGA 1767 0.4205 MDVHLQTEKNVFVIFYAGEKAKAKILKICEAFGANRYPFAEELGKQAQMITEVSGRLLELKTTIDAGLHHRDHLLNTIGVQFEQWDVLVRKEKSIHHTLNMLSLDVTKKCLVAEGWSPIFANKQIQDALQRAALDSNSQVNAIFQVLHTRELPPTFFRTNKFTSSFQGIIDSYGVAKYQEANPTVYTVVTFPFLFAVMFGDWGHGICLLLAALYFIIREKKLSSQKLDDITEMTFGGRYVILLMALFSIYTGFIYNEFFSVPFALFAPSAYDCRDLSCRDATTVGLIKVRDSYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIVMSYCNAIFFRNRVNVWFQFIPQMIFLNSLFGYLALLIIVKWCTGSQADLYHILIYMFLSPTDDLGENQLFVGQKNLQLVLLLLAFISVPWMLLPKPFILKKQHEARHGAESYTPLESTDESLQPESNHESHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLMAWGYNNVIILIVGLIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFHPFSFSLLDDEE 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10852g00003 588 Pfam V-type ATPase 116kDa subunit family 6 581 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vium10852g00003 588 PANTHER VACUOLAR PROTON ATPASES 6 585 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vium10852g00003 588 MobiDBLite consensus disorder prediction 442 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10852g00003 Vium-Chr10852 6072 12100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10852g00003 6 588 Primary Pumps ATPases(2) AT2G21410 79.931 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10852g00003 K02154 - gmx:100810062 1072.77