Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10838g00007 ATGTTCTCCAACTCCAGAACGCCAAATCGCAAACACCTTCAAAGCATGATGAAGAAAAAGTGCAGTTCAGGTCGGCAAAGGATTCCGATTGAGAAAATACCAAAAAAGAGTCACTTACAAGTAACATTTTCGAAGCGTCGTTCGGGACTCTTCAAAAAAGCGAGTGAGCTCTGCACACTCTGTGGAGTAGAAATCGCAATCATCGTTTTCTCTCCCGCGGACAAGGCCTTTTCGTTCGGCCACCCGCAAGTTGAATCCGTCGTTGATTCTTACGTAACTTCAAACTCATCACCAGAGTATAATCGCAGTGGTGGAGGTCACCAACTCGTTGAGGCTCATCGCAGTGCTAATATTCGTAATCTCAACGCGCAACTCACTCAGATTGTTAACGAGCTAGAGATGGAGAAAAGGCGAGGAGAAGAGCTGGATCGAGCGTGGAAAACGAGACAGAGCCAATTCTGGTGGGAGATCCCCGTTAACGAACTTGGATTGCAAGAGTTACAGCATTTGATGTTTTCGTTGGAGGAACTGAAAAACACTGTTGCAAAATATGCTACTCAAATAATGTCCATGGACCAAACTAGTATTGGGCCAACAGTTACTGGACCCGGGCCCATTGGATTTACCCTTGGGCCTTACGATGCCTTCGACACCAAACATGCTGATATTTACGCTAATGCCCCCGGTCTGAGCTTTCCATATTAA 705 0.461 MFSNSRTPNRKHLQSMMKKKCSSGRQRIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPQVESVVDSYVTSNSSPEYNRSGGGHQLVEAHRSANIRNLNAQLTQIVNELEMEKRRGEELDRAWKTRQSQFWWEIPVNELGLQELQHLMFSLEELKNTVAKYATQIMSMDQTSIGPTVTGPGPIGFTLGPYDAFDTKHADIYANAPGLSFPY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10838g00007 234 Gene3D - 35 102 IPR036879 GO:0003677|GO:0046983
Vium10838g00007 234 SUPERFAMILY SRF-like 24 96 IPR036879 GO:0003677|GO:0046983
Vium10838g00007 234 Coils Coil 174 194 - -
Vium10838g00007 234 SMART madsneu2 23 82 IPR002100 GO:0003677|GO:0046983
Vium10838g00007 234 Gene3D - 105 196 - -
Vium10838g00007 234 CDD MADS_MEF2_like 24 97 IPR033896 GO:0000977|GO:0045944
Vium10838g00007 234 Coils Coil 115 142 - -
Vium10838g00007 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 32 79 IPR002100 GO:0003677|GO:0046983
Vium10838g00007 234 PRINTS MADS domain signature 60 81 IPR002100 GO:0003677|GO:0046983
Vium10838g00007 234 PRINTS MADS domain signature 25 45 IPR002100 GO:0003677|GO:0046983
Vium10838g00007 234 PRINTS MADS domain signature 45 60 IPR002100 GO:0003677|GO:0046983
Vium10838g00007 234 PANTHER MADS BOX PROTEIN 25 182 - -
Vium10838g00007 234 FunFam Agamous-like MADS-box protein AGL62 35 101 - -
Vium10838g00007 234 MobiDBLite consensus disorder prediction 1 25 - -
Vium10838g00007 234 ProSiteProfiles MADS-box domain profile. 23 83 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10838g00007 Vium-Chr10838 29456 30272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10838g00007 22 229 Type I MADS-box Gene Family AT2G24840 45.622 8.85e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium10838g00007 SRF-TF 3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10838g00007 - - lja:Lj0g3v0067779.1 244.973