Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10838g00004 ATGTTTACGCACGTATCCATGGCTTCGCTCAAGCTTGTGCTGCTGTTGTTCATTCTCAGCTTCCTCAACTTGAACACTTGCAAAGCACAGGACCAACAGAGCACCGACCCTGTCTATCTGTACCATAACTGTTCAGGCGGCAACACCACCGCCAACAGTGCCTACCAACTAAACGTCGGCACCCTCTTCAGTTCCCTATCTTCAAAATCCATAGAATTCTCAAACGACACCGTCGGAACATCCTCCTCCGACAGGGTGTACGGACTGTTCATGTGCAGAGGAGACGTGCCCACAGCGCTGTGTCAACAGTGCGTGTTGAACGCAACGCGACGTCTCCGCTCAGAGTGCTCTCTGGCCAAACAGGCCGTGATATGGTACGACGAGTGCACTGTTCGCTACTCCAACCGCTCTTTCTTCTCCACGGTGGCCGTTCGGCCACGTGTCGGACTCCTCAACTCTGCCAACATATCCAACCAAGAAGCCTTCATGAAACTGCTTTTCTCAACCATAAACACAACCGCGGATGAGGCTGCCAATTTTTCCGTGGGATTGAAGAAATACGCGACCAATCAGGCCAACATTTCTGGGTTTCAGTCACTATACTGTTTGGCTCAGTGCACACCCGATCTGTCCCCGCAAGACTGCAGAAGTTGTCTCAGTGGTGTGATTGGAGACCTTCCTCGGTGCTGTCAGGGAAAGCAGGGAGGAAGGGTTCTCTATCCTAGCTGCAACGTTAGGTACGAACTCTACCCTTTCTACCGCCAAGTCGCACCCGCGCCTCCACCCTCATCGCCCCTACTTCCGCCTCCAGCTTCCGCTAATTCCCAAGGAGGCGGTGGGATCTCAACTGGGACCATTGTTGCGATTGTGGTTCCAATTACGGTAGCCGTGCTTCTGTTTATAGTGGGAATTTGTTTCTTGAGTAGAAGAGCTAGAAAGAAGCAGGGTTCTCTAAAGGAAGGAAAAAATGTAGATGACATCACCACTGTGGAATCCTTGCAATTCAGTTTTGGCACGATTTCAGCGGCCACAAACAATTTCTCTGCGGAAAATAAGCTGGGGGAGGGTGGATTTGGTGAGGTTTTCAAGGGTGCTCTTCCGACTGGACAAGAAATAGCTGTCAAAAGACTCTCCAAAAGTTCTGGGCAAGGTGGAGAAGAATTTAAGAATGAAGTGGTGGTAGTTGCCAAGCTCCAACATAGAAATTTAGTGAGGCTTCTTGGGTTTTGCTTGCAAGGAGAAGAGAAGATACTTGTTTATGAATATGTTCCCAACAAAAGTCTCGACTACACTCTCTTCGACCCTGAAAAGCAAAGGGAGTTGGATTGGAGGAGACGTTACAAGATTATTGAAGGGACTGCTCGAGGCATTCAATATCTTCATGAAGATTCTAGGCTTAGAATTATACATCGAGATCTTAAAGCAAGTAACATATTGTTAGATAGTGATTTGAGTCCAAAGATCTCAGATTTTGGCATGGCAAGAATATTTGGAGTTGATCAAACTCAAGGAAACACAGACAGAATTGTAGGAACCTATGGATATATGGCTCCAGAATATGCAATGCATGGAGAGTTCTCTGTTAAGTCTGACGTGTACAGTTTTGGAGTCCTCCTTATGGAGATTATAAGCGGCAAGAAGAATAGTTCTTTCTATCAAACAGATGGTGCTGAGGATCTATTGAGCTATGCGTGGCTACTTTGGAAGGATGGAACACCTTTGGAACTGATGGACCCCATATTAAGAGAATCCTACAATCAGAATGAAATCATCAGAACCATCCATATTGGTCTGCTGTGTGTCCAAGAAGATCCCGAAGACAGACCTACAATGGCAACAATAGTTCTTATGCTAGATAGTAGCACTGTTACTCTACCAACTCCTAAGCGGCCTGCATTTTTCATCCACAGTGGAACTGATACATACATGCCAAAAGGGCAGCAATTTGATCAGTCTATAACAAAATCATTACCAGTTTCTATCAATGAAGTTTCCATTAGCGAAATGGATCCTAGATAA 2019 0.4626 MFTHVSMASLKLVLLLFILSFLNLNTCKAQDQQSTDPVYLYHNCSGGNTTANSAYQLNVGTLFSSLSSKSIEFSNDTVGTSSSDRVYGLFMCRGDVPTALCQQCVLNATRRLRSECSLAKQAVIWYDECTVRYSNRSFFSTVAVRPRVGLLNSANISNQEAFMKLLFSTINTTADEAANFSVGLKKYATNQANISGFQSLYCLAQCTPDLSPQDCRSCLSGVIGDLPRCCQGKQGGRVLYPSCNVRYELYPFYRQVAPAPPPSSPLLPPPASANSQGGGGISTGTIVAIVVPITVAVLLFIVGICFLSRRARKKQGSLKEGKNVDDITTVESLQFSFGTISAATNNFSAENKLGEGGFGEVFKGALPTGQEIAVKRLSKSSGQGGEEFKNEVVVVAKLQHRNLVRLLGFCLQGEEKILVYEYVPNKSLDYTLFDPEKQRELDWRRRYKIIEGTARGIQYLHEDSRLRIIHRDLKASNILLDSDLSPKISDFGMARIFGVDQTQGNTDRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLLMEIISGKKNSSFYQTDGAEDLLSYAWLLWKDGTPLELMDPILRESYNQNEIIRTIHIGLLCVQEDPEDRPTMATIVLMLDSSTVTLPTPKRPAFFIHSGTDTYMPKGQQFDQSITKSLPVSINEVSISEMDPR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10838g00004 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Vium10838g00004 672 FunFam Cysteine-rich receptor-like protein kinase 10 309 422 - -
Vium10838g00004 672 Pfam Protein tyrosine and serine/threonine kinase 349 616 IPR001245 GO:0004672|GO:0006468
Vium10838g00004 672 SMART serkin_6 347 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10838g00004 672 Gene3D Transferase(Phosphotransferase) domain 1 423 626 - -
Vium10838g00004 672 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Vium10838g00004 672 CDD STKc_IRAK 353 619 - -
Vium10838g00004 672 FunFam cysteine-rich receptor-like protein kinase 10 423 625 - -
Vium10838g00004 672 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 37 137 - -
Vium10838g00004 672 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 43 672 - -
Vium10838g00004 672 Gene3D - 36 138 IPR038408 -
Vium10838g00004 672 Gene3D - 147 252 IPR038408 -
Vium10838g00004 672 ProSiteProfiles Protein kinase domain profile. 347 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10838g00004 672 Gene3D Phosphorylase Kinase; domain 1 308 422 - -
Vium10838g00004 672 FunFam Cysteine-rich receptor-like protein kinase 25 146 252 - -
Vium10838g00004 672 Pfam Salt stress response/antifungal 44 135 IPR002902 -
Vium10838g00004 672 Pfam Salt stress response/antifungal 156 250 IPR002902 -
Vium10838g00004 672 ProSiteProfiles Gnk2-homologous domain profile. 37 138 IPR002902 -
Vium10838g00004 672 SUPERFAMILY Protein kinase-like (PK-like) 332 641 IPR011009 -
Vium10838g00004 672 ProSiteProfiles Gnk2-homologous domain profile. 144 252 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10838g00004 Vium-Chr10838 13106 16389 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10838g00004 13 672 Receptor kinase-like Gene Family AT4G05200 55.178 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium10838g00004 PK_Tyr_Ser-Thr 9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10838g00004 - - vun:114173511 1177.54