LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium10838g00003	ATGTTTATGTCGTCTCTCAATCGCGTTTCTGGAGAAGACCCTGTTGATATTTACTGTCCCAGTGAATTCCCACTGTACAACCTCAATAGTTCATTCCATCACAACCTCAACCTTGTTCTGGGGTTGCTTTCCTCCGACACCGCTTCAAAGGCTGGTTTCTATAACACTTTTATAGGAGAAGAGACAAACAAAGTGTACGGACAGTCACTGTGCAGAGGGGACATCGGCAACTACACAGTTTGCAAAGAATGCATTGAGAAAGCAAGCCAAGATATCATCAATAGGTGCAGGAGTGAAAATGCAATGATATGGTATAACCTTTGCCAAGTACGCTACTCCTTTCAGAGCTTTGATGTGGTGGCTTACACCGGAAAGTACCCCAAGCAGAATGATGAGGAGAAGAATGTTTCTGATCCTATTCGATTTAGGGAATACTTGACTTTTCTAATGAAGAATCTCTCGAACGAGGCTGCTTTCAATCCTGTCAAGAACATGTTTGCGGCAGGTGAAATTGACTATCCTGGGAAGAAGACAATTTATGGGTTGGTCCAATGTACGAGGGACATGTCCCACGACGGCTGTAGCACTTGTTTGAGTAACGCCTTCACAGAAATCACTGCATGCTGCTCCTACAGAGAAGGTGGGATTATTCTTAGTCGTACTTGCAATATGAGGTTCCAAATGTCTCAGTTCTTCAATGCTTCTTCTGCGTATATGTTGGTTTACCCAACTTCCTCAGCACTTGTTGTTGGGTTGGGCATTGCATGCTTACGAGGAAAGAAAAATAGAGACAGAGATGAAGAAATGAGTGAACGAACGCTATTACAAGAGTTGACTACCCCTAAGCATGTGGCAGTCACAGAAGAAGGTGATTTGATTAGTTCCGAAGAACTGTTGTTCATGACTTTAGCTTCAATCAGGGTTGCTACTGATGACTTTTCAGATACAAATAAGCTGGGACAAGGAGGGTTTGGTGCAGTGTACAAGGGTGTTCTGGCAGATGGTAATGAAATAGCAGTCAAAAGATTGTCGAGGAAATCTTGGCAAGGCATAGAAGAATTTAAAAATGAAGTTGTGTTGATTGCCAAACTTCAACACAAGAATTTGGTGAGGCTGTTAGGTTGTGCCTTGGAGGGAGAAGAAAAGTTACTGATATATGAATTCATGTCAAACAAAAGCCTTGATCAACTTATATTTGATCCAGAAAAACGTTCAAAGCTTGATTGGAAGACATACAATGGTATTATCGATGGCATAGCGAGAGGACTGCTTTATCTCCACGAGGAGTCTCGCCTTAAAATCATTCACAGAGACTTAAAACCCAACAATGTGTTGTTAGACCACGAACTGTTGGCTAAAATATCAGATTTTGGTATGGCCAGGATATTTTCTGAGAATCAGAATGCAGCAAACACCAAAAGAGTTGTGGGAACATATGGATATATGGCTCCAGAGTATGCAATGGAAGGATTGTTCAGTGTGAAATCCGATGTGTTCAGCTTTGGCGTTATCTTGCTTGAAATCATCAGCGGAAAAAGAAACAGTGGTTTTTACCAAACCGAACTTGCCCCGACACTGCTGGCATATGCATGGCGAGTGTGGAATGAAGGAAAAGCATTGGACTTTGTGGATCCAGTGGTGTTGGAATCATGCCTTGCATCTGAAGTTGTAAGATGCATGCACATTGGGCTTCTGTGCGTGCAGGAAAATCCGGAACACAGGCCCACCATGTCAGCTGTGATGCTTCTCCTGGGAAGTGAATCAATGGTCCTTCCCCAACCAAAACAACCTGCTTTTTCTTTGAGTAGGGTGCTTCGTCTCGATCCATCTACAAAAACCAATCCTTCAGGAAATGAGATTATATTTTCTGATATTTTACCACGATGA	1887	0.4255	MFMSSLNRVSGEDPVDIYCPSEFPLYNLNSSFHHNLNLVLGLLSSDTASKAGFYNTFIGEETNKVYGQSLCRGDIGNYTVCKECIEKASQDIINRCRSENAMIWYNLCQVRYSFQSFDVVAYTGKYPKQNDEEKNVSDPIRFREYLTFLMKNLSNEAAFNPVKNMFAAGEIDYPGKKTIYGLVQCTRDMSHDGCSTCLSNAFTEITACCSYREGGIILSRTCNMRFQMSQFFNASSAYMLVYPTSSALVVGLGIACLRGKKNRDRDEEMSERTLLQELTTPKHVAVTEEGDLISSEELLFMTLASIRVATDDFSDTNKLGQGGFGAVYKGVLADGNEIAVKRLSRKSWQGIEEFKNEVVLIAKLQHKNLVRLLGCALEGEEKLLIYEFMSNKSLDQLIFDPEKRSKLDWKTYNGIIDGIARGLLYLHEESRLKIIHRDLKPNNVLLDHELLAKISDFGMARIFSENQNAANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVILLEIISGKRNSGFYQTELAPTLLAYAWRVWNEGKALDFVDPVVLESCLASEVVRCMHIGLLCVQENPEHRPTMSAVMLLLGSESMVLPQPKQPAFSLSRVLRLDPSTKTNPSGNEIIFSDILPR	628

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium10838g00003	628	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	434	446	IPR008271	GO:0004672\|GO:0006468
	Vium10838g00003	628	FunFam	Uncharacterized protein	389	590	-	-
	Vium10838g00003	628	Pfam	Salt stress response/antifungal	26	114	IPR002902	-
	Vium10838g00003	628	Pfam	Salt stress response/antifungal	134	227	IPR002902	-
	Vium10838g00003	628	CDD	STKc_IRAK	319	580	-	-
	Vium10838g00003	628	Gene3D	Phosphorylase Kinase; domain 1	288	388	-	-
	Vium10838g00003	628	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	279	388	-	-
	Vium10838g00003	628	SUPERFAMILY	Protein kinase-like (PK-like)	295	583	IPR011009	-
	Vium10838g00003	628	ProSiteProfiles	Gnk2-homologous domain profile.	124	231	IPR002902	-
	Vium10838g00003	628	Pfam	Protein tyrosine and serine/threonine kinase	316	581	IPR001245	GO:0004672\|GO:0006468
	Vium10838g00003	628	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	27	606	-	-
	Vium10838g00003	628	ProSiteProfiles	Gnk2-homologous domain profile.	13	117	IPR002902	-
	Vium10838g00003	628	SMART	serkin_6	313	590	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium10838g00003	628	Gene3D	-	125	231	IPR038408	-
	Vium10838g00003	628	Gene3D	-	18	117	IPR038408	-
	Vium10838g00003	628	ProSitePatterns	Protein kinases ATP-binding region signature.	319	341	IPR017441	GO:0005524
	Vium10838g00003	628	ProSiteProfiles	Protein kinase domain profile.	313	599	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium10838g00003	628	FunFam	Cysteine-rich receptor-like protein kinase 10	127	231	-	-
	Vium10838g00003	628	Gene3D	Transferase(Phosphotransferase) domain 1	389	590	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium10838g00003	Vium-Chr10838	9237	12613	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium10838g00003	1	601	Receptor kinase-like Gene Family	AT4G05200	43.192	4.67e-165	486

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vium10838g00003		PK_Tyr_Ser-Thr	2.9e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium10838g00003	-		-	gmx:102669229	1042.34