Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10838g00002 ATGCATTCCAAACCCATTCAATTGCTGCTTCTTTGCACTTTTGCTTTGTTTTCAGATGTTGTATTTGGCGATCCTCCGTATAATATTTGTTCTTCAAGCGGCAGCTATGTAAATGGCGGTTCCTTTGAAAACAATTTAAACAACCTGCTTTCATCTTTATCCTCCAATGCTTCAGACTCCAAATTCTATAATACTTCTTATGGGATTGCCTCTGACAGAGTTTATGGCCTCTACATGTGCCTCGACTATATTTCAAATGATAATTGCCAGAAATGCATCGCCACAGTTACAGAGGAAATTGTCAAACTGTGTCCTCAAGCAAAAGAAGCAATTGTGTGGGAAGAGTTGTGTCAGTTGCGTTATTCCAACATTAATTTCCTGGGTAGTTTGAATGTCACGGGAAACATTGGCTTAGATAATGTACAGAATCTTACAGAGCCAAAGAAGTTTGAGTCTGCTGTGAATGAGACACTAAGGAATCTTACTAAGGTAGCATCTTTTCATGTTTCGGCTAACATGTATGCTACTGGAGATGTCCCCTTTGGAGATCAAACAATATTTGCCTTAGTGCAGTGCACCAGAGATTTAGCTGCAAATGATTGTAATAGCTGCCTACAAAGTGCCATTGGAGATATACCAAGTTGTTGCTATGCCTCCATCGGGGCCAGAGTTCTGAGCCGTAGCTGTTATTTAAGGTATGAATTTTATGCATTTTATAATGGTGTCACAGGACCAACAGATTCTTCAAATGGCAAGAAAGAAAGCAAAAATAAGTCAAGCAAAACATGGATGATTGCTGGAATTGCAGTTATGGTAGGCTTGGTCATAGTATTTTTCATTTTCGGACTGTACCTTTTCAGGAATAAAAGACATCGGCATGGTAAAAATGAAATAGAAAATCATAACATCAATCTTGGATCTCTTCGAGTGGCTACCAATAATTTTTCTGATTTGAATAAGCTTGGACAAGGTGGCTTTGGCCCTGTTTACAAGGGGAAACTTGGTGATGGCCAAGAAGTAGCAATCAAGAGGTTGTCAGCTTGCTCTGAACAAGGCTCAGAGGAATTCATAAACGAGGTTCTTCTGATAATGAAACTTCAACACAAAAATCTTGTAAAACTTCTTGGATTTTGTGTAGATGGAGAGGAGAAGCTTCTTGTGTATGAATTTTTACCCAATGGTAGTCTTGATGTCGTACTCTTTGATCCAATGCAACGTGCACAACTGGATTGGAGCAAACGCCTCAATATCATAAATGGAATAGCAAGAGGGATACTTTATCTTCACGAAGATTCTCGACTGAAAGTGATTCATAGAGACCTAAAAGCAAGTAATGTATTGTTGGACCATGACATGAATGCAAAGATCTCAGACTTTGGAATGGCAAGGATATTTTCAGGAAATGAAGGTGAAGCTAACACTGCTACAATAGTTGGCACATATGGGTATATGGCTCCAGAGTATGCAATGGAGGGATTATATTCCATAAAATCTGATGTGTTTGGGTTTGGTGTACTATTGCTTGAGATCATTACAGGGAAACGTAACGCGGGTTTCTATCACTCTAAAAACACTCCTAGCCTTCTGTCATATGCATGGAGTCTATGGAATGAAGGAAAGGGTATAGAACTAAGTGATTCCTTGTTGTGTGATTCATGCCCTGGAGATGAGTTTTTGAGATACATGCAGATTGGACTACTGTGTGTTCAAGAGGATGCATATGATAGACCAACCATGTCTTCTGTTGTGATGATGCTGAAGAATGAATCAGCTACGCTTGGTCATCCAGAAAAACCACCTTTCTCTGTAGGGAGATTCCATGCTAATGACTCAGATTCACAAGAATGCTCAGTCAATTTCTTAACCATGTCAGATATATTACCCCAGTAA 1890 0.3937 MHSKPIQLLLLCTFALFSDVVFGDPPYNICSSSGSYVNGGSFENNLNNLLSSLSSNASDSKFYNTSYGIASDRVYGLYMCLDYISNDNCQKCIATVTEEIVKLCPQAKEAIVWEELCQLRYSNINFLGSLNVTGNIGLDNVQNLTEPKKFESAVNETLRNLTKVASFHVSANMYATGDVPFGDQTIFALVQCTRDLAANDCNSCLQSAIGDIPSCCYASIGARVLSRSCYLRYEFYAFYNGVTGPTDSSNGKKESKNKSSKTWMIAGIAVMVGLVIVFFIFGLYLFRNKRHRHGKNEIENHNINLGSLRVATNNFSDLNKLGQGGFGPVYKGKLGDGQEVAIKRLSACSEQGSEEFINEVLLIMKLQHKNLVKLLGFCVDGEEKLLVYEFLPNGSLDVVLFDPMQRAQLDWSKRLNIINGIARGILYLHEDSRLKVIHRDLKASNVLLDHDMNAKISDFGMARIFSGNEGEANTATIVGTYGYMAPEYAMEGLYSIKSDVFGFGVLLLEIITGKRNAGFYHSKNTPSLLSYAWSLWNEGKGIELSDSLLCDSCPGDEFLRYMQIGLLCVQEDAYDRPTMSSVVMMLKNESATLGHPEKPPFSVGRFHANDSDSQECSVNFLTMSDILPQ 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10838g00002 629 FunFam Cysteine-rich receptor-like protein kinase 10 286 390 - -
Vium10838g00002 629 ProSiteProfiles Protein kinase domain profile. 315 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10838g00002 629 ProSiteProfiles Gnk2-homologous domain profile. 24 126 IPR002902 -
Vium10838g00002 629 CDD STKc_IRAK 321 588 - -
Vium10838g00002 629 SMART serkin_6 315 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10838g00002 629 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 625 - -
Vium10838g00002 629 Pfam Salt stress response/antifungal 30 123 IPR002902 -
Vium10838g00002 629 Pfam Salt stress response/antifungal 142 235 IPR002902 -
Vium10838g00002 629 ProSiteProfiles Gnk2-homologous domain profile. 132 238 IPR002902 -
Vium10838g00002 629 SUPERFAMILY Protein kinase-like (PK-like) 301 616 IPR011009 -
Vium10838g00002 629 Gene3D Transferase(Phosphotransferase) domain 1 391 596 - -
Vium10838g00002 629 FunFam Cysteine-rich receptor-like protein kinase 10 135 238 - -
Vium10838g00002 629 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 21 27 IPR002052 GO:0003676|GO:0008168|GO:0032259
Vium10838g00002 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Vium10838g00002 629 Gene3D Phosphorylase Kinase; domain 1 285 390 - -
Vium10838g00002 629 FunFam Liguleless narrow1 391 594 - -
Vium10838g00002 629 FunFam Cysteine-rich receptor-like protein kinase 28 26 125 - -
Vium10838g00002 629 Gene3D - 26 126 IPR038408 -
Vium10838g00002 629 Gene3D - 136 238 IPR038408 -
Vium10838g00002 629 Pfam Protein tyrosine and serine/threonine kinase 319 585 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10838g00002 Vium-Chr10838 4635 7413 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10838g00002 21 601 Receptor kinase-like Gene Family AT4G05200 44.553 2.90e-175 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium10838g00002 PK_Tyr_Ser-Thr 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10838g00002 - - gmx:102669364 1055.43