Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10827g00001 ATGGAGGAGCGGTATGAGTCATTGAAGGAGCTTGGTTCTGGGAATTTTGGTGTGGCCAGGTTGGCAAAAGACAAGAAGACTGGAGAGCTTGTTGCCGTCAAATACATAGAGAGGGGTAAAAAGATTGATGAGAATGTTCAGAGGGAGATAATTAACCACCGATCTTTAAGGCATCCAAATATAATCAGGTTCAAAGAGGTCTTGCTGACCCCGACACATTTAGCTATTGTCTTGGAGTATGCTTCAGGTGGTGAACTTTTTGAGAGGATATGTAGTGCTGGTCGATTTAGCGAAGATGAGGCTAGATATTTCTTCCAGCAGCTAATATCCGGTGTTAGCTACTGTCATTCAATGGAAATTTGTCATAGAGATCTGAAATTGGAAAACACTCTCCTGGACGGAAAACCATCTCCTCGACTTAAAATTTGTGACTTTGGTTACTCCAAGTCTGCTCTACTGCACTCTCAACCTAAATCAACAGTTGGAACTCCTGCATACATTGCTCCAGAGGTTCTGTCACGAAAGGAGTATGATGGGAAGATTTCAGATGTTTGGTCCTGTGGTGTGACTCTTTATGTCATGCTGGTTGGTGCATACCCATTTGAAGATCCAGAAGATCCCAGAAATTTCAGAAAGACTATCGGGAGAATAATTGGTGTTCAGTACTCCATACCCGACTATGTTCGTGTTTCTTCTGAGTGTAGGAATCTTCTCTCTAGCATCTTTGTTGCTGATCCTGCCAAGAGGATCACCATTCCAGAGATAAAACAGAATCCTTGGTTTCTGAAGAATTTGCCTAAAGAGATCATCGAAGCTGAAAGAAAAGGATTTGAGGAAACAAATAAAGACCAACCAAGCCAAAAGGTGGAAGAAATCATGAAGATCATACAAGAAGCAAGGGTACCAGGACAAGGATCCAAAGCTGGTGATGGTATCGGTGGGCAAGGTGCTACTGGATCATTAGATATTGAGGATGTCGAGGAAATTGATGTTAGTGGTGACTATGAACATGTGTGA 1017 0.4238 MEERYESLKELGSGNFGVARLAKDKKTGELVAVKYIERGKKIDENVQREIINHRSLRHPNIIRFKEVLLTPTHLAIVLEYASGGELFERICSAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGKPSPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKISDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRIIGVQYSIPDYVRVSSECRNLLSSIFVADPAKRITIPEIKQNPWFLKNLPKEIIEAERKGFEETNKDQPSQKVEEIMKIIQEARVPGQGSKAGDGIGGQGATGSLDIEDVEEIDVSGDYEHV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10827g00001 338 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Vium10827g00001 338 MobiDBLite consensus disorder prediction 300 338 - -
Vium10827g00001 338 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Vium10827g00001 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Vium10827g00001 338 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Vium10827g00001 338 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10827g00001 338 PANTHER SERINE/THREONINE KINASE 3 284 - -
Vium10827g00001 338 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10827g00001 338 SUPERFAMILY Protein kinase-like (PK-like) 3 268 IPR011009 -
Vium10827g00001 338 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10827g00001 338 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Vium10827g00001 338 CDD STKc_SnRK2 4 260 - -
Vium10827g00001 338 FunFam Serine/threonine-protein kinase SRK2E 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10827g00001 Vium-Chr10827 7 5073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10827g00001 4 279 CBL-interacting serine-threonine protein kinases AT4G24400 42.105 6.97e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vium10827g00001 Pkinase 8.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10827g00001 K14498 - gmx:100782714 624.394