Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10825g00001 ATGGCGGTTCCTCCGTCGGTCGCTGGCTCTCCGGCGTCACTCTACGTCGGCGACCTCCATTCTGACGTCTCCGACAGCCACCTCATCGACGCATTCTCCGAGTTCAAGAGCCTTAACTCCGTTCGCGTCTGCAAAGACTCCTCCACCGGCAAATCCCTCTGTTAAGGCTACGTCAACTTTGTTTCTCCTCAGGACGCAATTCGTGCAATCGAGATTAAGAATCATACGTTGCTGAATGGAAAAATGATGAGAGTGATGTGGTCGCGTCGCGATCCTGATGCGAGGAAGAGCACTATTGGGAACTTGTTTATTAAGAACATACCGGAATCGATAGATAATTCTGGACTGCAAGATATATTCAAGAAATATGGAAATATTTTGTCCAGCAAAGTTGTCACGTCTGACGATGGGAAGAGTAAAGGATACGGTTTTGTTCAATTTGAATCGGAGGAATCCTCTCATGTTGCTATAGAGAAGCTGAATGGCTCTACTGTTGGTGATAAACAGTTATATGTCGGGAAGTTTGTAAAAAAAAGTGATCGCATTTTTTCTGGCGCGGATGGATATACAAACTTGTACATGAAGAATTTAGACTTGGATATTACAGAAGCAAAATTGAAGGAGAAGTTTTCCTCTTTCGGGAAAATTGTTAGCTTGGCTATTGCAAAGGACCACAATGGGATGCCCAAGGGTTTTGGCTTTGTGAACTATGATAACCCCGATGATGCTAAAAAGGCAATGGAAGGAATGAATGGATCACAATTAGGTTCTAAGATTCTGTACGTAGCCAGAGCGCAAAAGAAAGCTGAGCGCGAGCAGATCTTGCAGCACCAATTTGAGGAGAAACGGAAGGAACAAATATTGAAATACAAGGGGTCGAACGTTTATGTGAAAAACATTCATGACAATGTAAATGACGAAGAACTGAGGGATCTTTTCAGTGCATGTGGCACTATAACTTCATCAAAAGTTATGCAAGATGACAAAGGCATATGTAAAGGGTTTGGCTTTGTCAACTTCTCCACTCCAGAGGAGGCTAATAAAGCCGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCACTGTATGTTGCCCTTGCTCAGAGGAAAGAGGATAGGAAAACACAATTGAAGCTTCAATACACACAGCAAATAGCAGGACTAGCTGGACCTTCGACTACTATTATCCCTGGTGGATACACTGCTTATTATTATGCAGCTACTGGTGCTATTTCACATGTGCCTCCTCGAGCTGGACTGATGTATCATCCTCTTGCATTGAGGCCTGGATGGGGAGCTAATGCCTTTGCACCCCCTGCTATATCATTTCAACAGTCATCTGTTCCCGCAGTTTCTAACAATAATAGGCAGCATAGGCAAAACAGGGGAAGGTTGAATGGGCATTCAGCATCACAGGGAAATACTCAGTCTGGTACTTATTTGCAACAAGGCCAGCAGACTTCTCAGTCAATGATCTCTTCAAGAGACTCAAGTACTCAGCAGAGAACCGGACACCTTAAGTATATACCCAATGGACGCCAGCGTGAAATGGAAAAAGGATCTGGTTCCTCATCCGCTACTTAGGGATCCCAGGGTCCAGAAATGCTGCATAGCTTTCTTGCTGGGGCTGCTCCCGAGCAGCAGAAGCAGATACTCGGAGAGCATCTTTACATGCTTGTTCAGAAACTAAAGCCTAGCCTAGCAGCAAAAGTAACAGGTATGCTTTTGGAGATGGACAATGGAGAATTGTTGGTTCTCCTGGAATCGCCGGAGGCTCTTTCCGTGAAGGTGGAAGAAGTTGTGCAAGTGCTTAAGAACACTAAGACCAAAGTTTCTGGCCAGGACGTACTTCGTTCAAATTACCTTTCAGCTGAAGTTGCAGTAAACTAA 1893 0.4443 MAVPPSVAGSPASLYVGDLHSDVSDSHLIDAFSEFKSLNSVRVCKDSSTGKSLCXGYVNFVSPQDAIRAIEIKNHTLLNGKMMRVMWSRRDPDARKSTIGNLFIKNIPESIDNSGLQDIFKKYGNILSSKVVTSDDGKSKGYGFVQFESEESSHVAIEKLNGSTVGDKQLYVGKFVKKSDRIFSGADGYTNLYMKNLDLDITEAKLKEKFSSFGKIVSLAIAKDHNGMPKGFGFVNYDNPDDAKKAMEGMNGSQLGSKILYVARAQKKAEREQILQHQFEEKRKEQILKYKGSNVYVKNIHDNVNDEELRDLFSACGTITSSKVMQDDKGICKGFGFVNFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKTQLKLQYTQQIAGLAGPSTTIIPGGYTAYYYAATGAISHVPPRAGLMYHPLALRPGWGANAFAPPAISFQQSSVPAVSNNNRQHRQNRGRLNGHSASQGNTQSGTYLQQGQQTSQSMISSRDSSTQQRTGHLKYIPNGRQREMEKGSGSSSATCXGSQGPEMLHSFLAGAAPEQQKQILGEHLYMLVQKLKPSLAAKVTGMLLEMDNGELLVLLESPEALSVKVEEVVQVLKNTKTKVSGQDVLRSNYLSAEVAVN 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10825g00001 631 FunFam Polyadenylate-binding protein 4 96 - -
Vium10825g00001 631 CDD RRM2_I_PABPs 99 174 IPR045305 -
Vium10825g00001 631 Gene3D - 181 274 IPR012677 -
Vium10825g00001 631 Gene3D - 3 99 IPR012677 -
Vium10825g00001 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 370 IPR000504 GO:0003723
Vium10825g00001 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Vium10825g00001 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 259 IPR000504 GO:0003723
Vium10825g00001 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 82 IPR000504 GO:0003723
Vium10825g00001 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 363 IPR000504 GO:0003723
Vium10825g00001 631 Gene3D - 100 180 IPR012677 -
Vium10825g00001 631 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 534 611 IPR002004 GO:0003723
Vium10825g00001 631 FunFam Polyadenylate-binding protein 532 618 - -
Vium10825g00001 631 FunFam Polyadenylate-binding protein 276 384 - -
Vium10825g00001 631 Gene3D - 275 381 IPR012677 -
Vium10825g00001 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Vium10825g00001 631 Gene3D - 533 612 - -
Vium10825g00001 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 267 IPR000504 GO:0003723
Vium10825g00001 631 MobiDBLite consensus disorder prediction 448 508 - -
Vium10825g00001 631 SMART poly_2 546 609 IPR002004 GO:0003723
Vium10825g00001 631 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 607 IPR006515 GO:0003723
Vium10825g00001 631 SUPERFAMILY PABC (PABP) domain 538 617 IPR036053 GO:0003723
Vium10825g00001 631 SMART rrm1_1 13 86 IPR000504 GO:0003723
Vium10825g00001 631 SMART rrm1_1 191 263 IPR000504 GO:0003723
Vium10825g00001 631 SMART rrm1_1 294 366 IPR000504 GO:0003723
Vium10825g00001 631 SMART rrm1_1 101 173 IPR000504 GO:0003723
Vium10825g00001 631 MobiDBLite consensus disorder prediction 518 533 - -
Vium10825g00001 631 Pfam Poly-adenylate binding protein, unique domain 542 606 IPR002004 GO:0003723
Vium10825g00001 631 SUPERFAMILY RNA-binding domain, RBD 290 379 IPR035979 GO:0003676
Vium10825g00001 631 CDD RRM4_I_PABPs 292 370 - -
Vium10825g00001 631 FunFam Polyadenylate-binding protein 183 275 - -
Vium10825g00001 631 MobiDBLite consensus disorder prediction 448 533 - -
Vium10825g00001 631 SUPERFAMILY RNA-binding domain, RBD 12 179 IPR035979 GO:0003676
Vium10825g00001 631 FunFam Polyadenylate-binding protein 97 181 - -
Vium10825g00001 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Vium10825g00001 631 SMART rrm2_1 101 173 IPR003954 GO:0003676
Vium10825g00001 631 SMART rrm2_1 294 366 IPR003954 GO:0003676
Vium10825g00001 631 PANTHER RNA BINDING PROTEIN 13 71 - -
Vium10825g00001 631 SUPERFAMILY RNA-binding domain, RBD 188 276 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10825g00001 Vium-Chr10825 3374 8049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10825g00001 12 629 Eukaryotic Initiation Factors Gene Family AT2G36660 51.603 0.0 607