Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10823g00008 ATATCTCAAACAAAGAAGTTGGGAGCAGTTGGCCTGCCAAGTTATCGAAGTTTCTCATTGGAAGAGATTGAGGCAGCTACAAACTACTTTGACACAGCTTCTTTAATGGGTGAAGATTCTTATGGGAAGATGTACAGAGGTCAGCTGAAGAATGGTTCGGTTGTTGCTATTCGATGTGTAGAAATGACAAAGAAATACAGCACTCAAAACTTTGTGAACCACATAGAGCTGATATCAAAACTCAGGCATCGTCATTTAGTCAGCGCTATTGGACACTGCTTTGAATGTTCTCTGGATGATTCGAGTGTCAACAAAGTTTTTCTTGTCTTTGAATATGTACCAAATGGCACGCTCAGGGATTGGATCTGTGATGAAAATGTTAGAAAATGCTTGAGTTGGACCCAACGCATTGGAGCTGCAATTGGAGTGGCAAAGGGAATCCAGTTTTTGCATACAGGGATAGTCCCTGGTGTATATTCCAACGATCTCAAGATAGAAGATGTTTTGATGGATCAGAATCTTGTTGCGAAAATCAGCAGTTATCATCTGCCTTTGTTATCTAACATGGGGAAGTGTAGTGTAAAGCATGAAGATAAGTCTGATATATACGACCTTGGAGTGATACTACTCGAACTCATTCTAGGAAGGCAAATAAAGACAGCAAATGATGCAGACGCTTTTAGAGATCTGTTGCAAGCAAGCTTAGGAGCAGACGAAGAGGGTAGGAGGAGTGTGGTTGATACAGCAATTCGCAAGGCATGCTTGGATCAATCATTGAAGACAATGATGGAGATATGTGTGAGGTGTATGGTTAAAGAGCCAGAAGATAGGCCCTCTATAGAGGATGTTCTGTGGAACTTGCAGTTTGCATCTCAAGTGCAGGATGCATGGAGAGGGGATTCACAAAGTAGTGAAGGGTCACCAGGCTCAGAATCTCGAGGACTTTCCTTTCAGTAG 957 0.4222 ISQTKKLGAVGLPSYRSFSLEEIEAATNYFDTASLMGEDSYGKMYRGQLKNGSVVAIRCVEMTKKYSTQNFVNHIELISKLRHRHLVSAIGHCFECSLDDSSVNKVFLVFEYVPNGTLRDWICDENVRKCLSWTQRIGAAIGVAKGIQFLHTGIVPGVYSNDLKIEDVLMDQNLVAKISSYHLPLLSNMGKCSVKHEDKSDIYDLGVILLELILGRQIKTANDADAFRDLLQASLGADEEGRRSVVDTAIRKACLDQSLKTMMEICVRCMVKEPEDRPSIEDVLWNLQFASQVQDAWRGDSQSSEGSPGSESRGLSFQ 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10823g00008 318 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 3 112 - -
Vium10823g00008 318 Gene3D Transferase(Phosphotransferase) domain 1 113 188 - -
Vium10823g00008 318 Gene3D Transferase(Phosphotransferase) domain 1 189 302 - -
Vium10823g00008 318 Pfam Protein tyrosine and serine/threonine kinase 34 183 IPR001245 GO:0004672|GO:0006468
Vium10823g00008 318 Gene3D Phosphorylase Kinase; domain 1 2 112 - -
Vium10823g00008 318 ProSiteProfiles Protein kinase domain profile. 30 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10823g00008 318 SUPERFAMILY Protein kinase-like (PK-like) 12 291 IPR011009 -
Vium10823g00008 318 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 301 - -
Vium10823g00008 318 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 113 303 - -
Vium10823g00008 318 MobiDBLite consensus disorder prediction 296 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10823g00008 Vium-Chr10823 27342 34045 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10823g00008 1 315 Miscellaneous Gene Families AT3G03770 61.027 3.29e-144 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vium10823g00008 PK_Tyr_Ser-Thr 4.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10823g00008 - - vum:124820116 630.172