Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10823g00006 ATGAAGAACCCGCCAACAAGATTAATATCAGAAAATGCTGCTTCTGGTTACACTTCTAAGTTGCTTTCTGATGCAAGGTATATATCTCAAACAAAGAAGTTGGGAGCAGTTGGCCTGCCAAGTTATCGAAGTTTCTCATTGGAAGAGATTGAGGCAGCTACAAACTACTTTGACACAGCTTCTTTAATGGGTGAAGATTCTTATGGGAAGATGTACAGAGGTCAGCTGAAGAATGGTTCGGTTGTTGCTATTCGATGTGTAGAAATGACAAAGAAATACAGCACTCAAAACTTTGTGAACCACATAGAGCTGATATCAAAACTCAGGCATCGTCATTTAGTCAGCGCTATTGGACACTGCTTTGAATGTTCTCTGGATGATTCGAGTGTCAACAAAGTATTTCTTGTCTTTGAATATGTACCAAATGGCACGCTCAGGGATTGGATCTGTGATGAAAATGTTAGAAAATGCTTGAGTTGGACCCAACGCATTGGAGCTGCAATTGGAGTGGCAAAGGGAATCCAGTTTTTGCATACAGGGATAGTCCCTGGTGTATATTCCAACGATCTCAAGATAGAAGATGTTTTGATGGATCAGAATCTTGTTGCGAAAATCAGCAGTTATCATCTGCCTTTGTTATCTAACATGGGGAAGGTTCGACATGGAAATTCTTCAAGTGGATTGAAACACTCTAGCAACAATAAAAGTGTAAAGCATGAAGATAAGTCTGATATATACGACCTTGGAGTGATACTACTCGAACTCATTCTAGGAAGGCAAATAAAGACAGCAAATGATGCAGACGCTTTTAGAGATCTGTTGCAAGCAAGCTTAGGAGCAGACGAAGAGGGTAGGAGGAGTGTGGTTGATACAGCAATTCGCAAGGCATGCTTGGATCAATCATTGAAGACAATGATGGAGATATGTGTGAGGTGTATGGTTAAAGAGCCAGAAGATAGGCCCTCTATAGAGGATGTTCTGTGGAACTTGCAGTTTGCATCTCAAGTGCAGGATGCATGGAGAGGGGATTCACAAAGTAGTGAAGGGTCACCAGGCTCAGAATCTCGAGGACTTTCCTTTCAGTAG 1086 0.4162 MKNPPTRLISENAASGYTSKLLSDARYISQTKKLGAVGLPSYRSFSLEEIEAATNYFDTASLMGEDSYGKMYRGQLKNGSVVAIRCVEMTKKYSTQNFVNHIELISKLRHRHLVSAIGHCFECSLDDSSVNKVFLVFEYVPNGTLRDWICDENVRKCLSWTQRIGAAIGVAKGIQFLHTGIVPGVYSNDLKIEDVLMDQNLVAKISSYHLPLLSNMGKVRHGNSSSGLKHSSNNKSVKHEDKSDIYDLGVILLELILGRQIKTANDADAFRDLLQASLGADEEGRRSVVDTAIRKACLDQSLKTMMEICVRCMVKEPEDRPSIEDVLWNLQFASQVQDAWRGDSQSSEGSPGSESRGLSFQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10823g00006 361 Gene3D Transferase(Phosphotransferase) domain 1 140 348 - -
Vium10823g00006 361 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 140 346 - -
Vium10823g00006 361 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 30 139 - -
Vium10823g00006 361 ProSiteProfiles Protein kinase domain profile. 57 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10823g00006 361 SUPERFAMILY Protein kinase-like (PK-like) 39 334 IPR011009 -
Vium10823g00006 361 MobiDBLite consensus disorder prediction 339 361 - -
Vium10823g00006 361 Gene3D Phosphorylase Kinase; domain 1 28 139 - -
Vium10823g00006 361 Pfam Protein tyrosine and serine/threonine kinase 61 327 IPR001245 GO:0004672|GO:0006468
Vium10823g00006 361 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 35 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10823g00006 Vium-Chr10823 23074 26473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10823g00006 7 358 Miscellaneous Gene Families AT3G03770 63.380 5.70e-161 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vium10823g00006 PK_Tyr_Ser-Thr 7.3e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10823g00006 - - vum:124820118 713.375