Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10823g00005 ATGGCTAATGAGGCAGAAGCCAATGTTGAAAAGCACAAAAGCAAGGTCTCAAAGTGTGTGAGATCACGAGCATCATCTCCTCCATGCGCAGCATGCAAGAAAATGAGAAAAAAATGCAGCAGTGACTGCATCTTTGCACCTTATTTTGGTTCTAGCCAGGGCTCAACGCTGTTTGCAGCAGTGCACAAGGTGTTTGGTGCAAACAATTTGTCAAAACTATTGCTAGAAGTTGAAGAGATTCATCGTAATGAGGCCATAAATTCTTTGTGCTACGAAGCTCAAACAAGGCTAGCCAACCCTGTTCATGGTTGTGTCTCCACCATTTCTGCTTTGCAACGACAGGTGGCATCATTGCAAGGAGAGCTTGCTATGGTTCAAAATCAATTGATTAATACACAACATTTATATGAAAGTCTTGTTGAGAGGACATATCAGCAACAACAGGCAAACATCAACGTAGTTGTGCAACCTTCTGCAAATAATGTGATGAACATGAGCTACTTCAACCCAGGTTTTGATCAGCTTTCAATGCAGACAGCACCTTCAACAGACAACATGCAGCCTCTTCCATTTTCTGGGCTTCCCCATTTCAACAATGGCATACCGCATTTCTTTCCATAA 621 0.4251 MANEAEANVEKHKSKVSKCVRSRASSPPCAACKKMRKKCSSDCIFAPYFGSSQGSTLFAAVHKVFGANNLSKLLLEVEEIHRNEAINSLCYEAQTRLANPVHGCVSTISALQRQVASLQGELAMVQNQLINTQHLYESLVERTYQQQQANINVVVQPSANNVMNMSYFNPGFDQLSMQTAPSTDNMQPLPFSGLPHFNNGIPHFFP 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10823g00005 206 Coils Coil 108 128 - -
Vium10823g00005 206 ProSiteProfiles LOB domain profile. 27 129 IPR004883 -
Vium10823g00005 206 PANTHER LOB DOMAIN CONTAINING PROTEIN 26 166 - -
Vium10823g00005 206 Pfam Lateral organ boundaries (LOB) domain 28 126 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10823g00005 Vium-Chr10823 18128 20494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10823g00005 28 133 AS2 family AT3G03760 63.208 5.11e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium10823g00005 LOB 4.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10823g00005 - - vra:106753728 348.206