Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1081g00002 ATGAGGAAGCGGCAGGTGGTTGTGAGAAGAGAGGAGCCTCAGAGAAGTGTTAGGAGTGTGAAGTATGGTGAGTGCCAGAAGAATCATGCAGCAAATGTTGGAGGGTATGCTGTTGATGGTTGCAGAGAGTTCATGGCAAGTGGTGGAGAAGGGACAACCGCTGCTCTCACTTGTGCTGCATGTGGCTGCCACAGGAACTTCCACAAGAGACAGGTGGAAACTGAAGTTGTGTGTGAGTGCTCCTCACCTCCCTCCATTGGCACATGA 267 0.5169 MRKRQVVVRREEPQRSVRSVKYGECQKNHAANVGGYAVDGCREFMASGGEGTTAALTCAACGCHRNFHKRQVETEVVCECSSPPSIGT 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1081g00002 88 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
Vium1081g00002 88 Pfam ZF-HD protein dimerisation region 20 72 IPR006456 -
Vium1081g00002 88 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 75 - -
Vium1081g00002 88 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 71 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1081g00002 Vium-Chr1081 51116 52512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1081g00002 1 87 Zinc finger-homeobox gene family AT3G28917 69.697 8.29e-43 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium1081g00002 ZF-HD_dimer 5.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1081g00002 - - aprc:113868039 153.68