Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1081g00001 ATGGGAAGGCCACCTTGTTGTGATAAAGGTGTGAAGAAAGGACCTTGGACTCCTGAAGAAGATATCATTTTGGTGTCTTACATACAGGACCATGGTCCTGGCAATTGGAAAGCTGTTCCTACCAATACTGGGTTGTCAAGGTGCAGCAAGAGTTGTAGACTTAGATGGACTAATTATCTGAGGCCAGGAATCAAAAGGGGTAACTTCACTGAACAAGAGGAGAAGATGATAATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCCATAGCTGCATACCTGCCACAAAGAACAGATAATGACATAAAGAACTACTGGAACACCTATCTGAAAAAGAAGCTGAACAAATTGGAAGCAAGTGGTTCTGAAGGAAGCTTGGGGCATGGTGGGGTTTCAGTTTCTCAGCCAATGTCTAGAGGGCAGTGGGAAAGAAGGCTACAAACGGATATTCACTTGGCGAAGAAAGCTCTCAGTGAAGCTCTTTCACCAAAGAATACATCATCTACTTTTTTAGCTGAGTTAAATTCAAACCTTTCCAATGATAATAGCACTGCTTCCTTCTACAACTCCACAAAACCAACACCTTCCATAAGCTATGCCTCTAGTGCTGACAACATAGCTCGTTTGTTGAAGGGGTGGATGAAAAGCACACCAAAACGTGCTGCCACTCAAAACTCCATTATCAACTTGGCTTGTGCAGGAGCTGACACTGCTTCCAGTGAAGGAACAACAAAGGGAAGCTCAACCAGTGTGGAGTTGTCTGAGACTTTTGAGACCTTGTTTGGTTATGAGTCTTTGGAGTCTTCAAATTCTGAGTTTTCACCTTCTCTTTCTCCTGAGGGCACTCTCTTCCAAGATGAGAGCAAGCCTGATATTACTGGAATAGACGTGCCTTTCTCTTTGCTTGAGAAATGGCTTCTGGATGATTCTGGTTGTCAAGAGAAACTTAGCTTCTAG 960 0.4354 MGRPPCCDKGVKKGPWTPEEDIILVSYIQDHGPGNWKAVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNKLEASGSEGSLGHGGVSVSQPMSRGQWERRLQTDIHLAKKALSEALSPKNTSSTFLAELNSNLSNDNSTASFYNSTKPTPSISYASSADNIARLLKGWMKSTPKRAATQNSIINLACAGADTASSEGTTKGSSTSVELSETFETLFGYESLESSNSEFSPSLSPEGTLFQDESKPDITGIDVPFSLLEKWLLDDSGCQEKLSF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1081g00001 319 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vium1081g00001 319 SMART sant 12 62 IPR001005 -
Vium1081g00001 319 SMART sant 65 113 IPR001005 -
Vium1081g00001 319 FunFam MYB-related transcription factor 12 65 - -
Vium1081g00001 319 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vium1081g00001 319 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Vium1081g00001 319 MobiDBLite consensus disorder prediction 270 284 - -
Vium1081g00001 319 CDD SANT 68 111 IPR001005 -
Vium1081g00001 319 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vium1081g00001 319 CDD SANT 15 60 IPR001005 -
Vium1081g00001 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 245 - -
Vium1081g00001 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Vium1081g00001 319 Gene3D - 67 126 - -
Vium1081g00001 319 MobiDBLite consensus disorder prediction 270 290 - -
Vium1081g00001 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Vium1081g00001 319 Gene3D - 12 65 - -
Vium1081g00001 319 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1081g00001 Vium-Chr1081 2598 4325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1081g00001 1 310 MYB Transcription Factor Family AT5G62470 52.857 8.79e-105 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium1081g00001 Myb_DNA-binding 3.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1081g00001 K09422 - gmx:778078 478.404