Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10819g00002 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATTCCTGCATCACCAACAATCAAAAGAAGCCTATGGGGGTGGACCAAGAACTTGTGGAGCTTCTGTGGCAAAATGGTCAGGTAGTGTTGCACAGCCAAACACATAGAAAACCAGTAGTGAATTCGATCACACCGAGACCTCTTCAGAGGGCTTTTCAATCAACACTAAGGACTAGTGAGCCATTTGGGAACTCAAGTAACTTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCTCTTGAGGATCCATTGGAACAAGAATTCTGTTCAAACCTTTTATCTGAACTGCCACAGTGTGATGTTGAGTCCTATAAGCAAATCAAGCCATTTGAAGAGGCAAAGTTTACCAAATTGGATGCTTCTGGTGCCCCCCATGTGCTTGTAAGTTCACAATCACCTACTATGAAATCCTCCTCTTTTCAGGAACTCTCAGGAATTCCTATACCTGCTCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAATAATAATGACTTGGGTGGTGGACCATGTAAGGTTCAAAACTTCTCTCACTTTTCACCTACCCTTAATGTTTCTTCAGCATTGCCTAATGGGCGTTTTAGAGACAAAATCACTGGTAACATGTCAAAAAATGAGGTTAGAGAGTGCTCATTGATGACAGTTGGATCAAGTTACTGTGGTAGCAATCACATGACCCAAGATCCAGATGCTAGCAGGGCATCAAGCAATGGTGTTTGGACTACTACTTTATCTGTTGACCCTGAAGCTGTCAGAGATGATGTGCCAAGAACAATTCCTCTGAGTGAGAAAGGGAAATCAGAGAAGCTTGAACCAACTGCTACTTCGTCTTCTGGTGGCTCAGGTACTAGTCTAGGAAAAACTTGTTCCTTATCCACCAGAAACCAGAGCCAAAAAAGAAAAACAATAGACGTGGAAGAATCTGAGGATCATAGTGAGGACACAGAACTTAAATCACCAGTTGGCAACAAGACATCTCAAAGGACAGGGTCGGCTAGAAGGAACCGTGCTGCTGAAGTGCATAATCTATCAGAAAGGAGAAGGAGAGATAGGATCAATGAGAAGATGAAAGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAAGAGGCAATAGAATATTTGAAATCACTTCAGTTACAACTTCAGCTAATGTGGATGGGATCTGGCATGGCACCAATGATGTTTCCAGGAATTCAGCACTATATGTCTCAAATGGGTATGGGAATGGCTACTTCTCCTTTCCCTCCCATTCAAAATCCAATGCAATTACCACGAGTACCTCTTGATCATCCAGTATCTTCATCTCAGACACCAAACCAGACATTGATGTGTCAAAATCCTATTTTGGGTGCCTTTAATTACCAAAATCAGATGCAAAATCCAGCTCTTTCAGAGCAATATGCACGTTACATGGGCTATCAACTTATGCAAAATGCTTCTCAGCCAATCAATGTATTTAGATATGGTCCCCAGGCAGTACAACATAGTCAAACAATGATTACACCCAGCAACAGCAGTGGAAACATGAGTGGAGCAGCAAATATTGATGAGACTGTGAGTGGCAAAATGGGTTAA 1641 0.4205 MNNSVPDWNFGSDSCITNNQKKPMGVDQELVELLWQNGQVVLHSQTHRKPVVNSITPRPLQRAFQSTLRTSEPFGNSSNLIQDDETVSWIQYPLEDPLEQEFCSNLLSELPQCDVESYKQIKPFEEAKFTKLDASGAPHVLVSSQSPTMKSSSFQELSGIPIPAPRFHVSDSPQKNNNDLGGGPCKVQNFSHFSPTLNVSSALPNGRFRDKITGNMSKNEVRECSLMTVGSSYCGSNHMTQDPDASRASSNGVWTTTLSVDPEAVRDDVPRTIPLSEKGKSEKLEPTATSSSGGSGTSLGKTCSLSTRNQSQKRKTIDVEESEDHSEDTELKSPVGNKTSQRTGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMAPMMFPGIQHYMSQMGMGMATSPFPPIQNPMQLPRVPLDHPVSSSQTPNQTLMCQNPILGAFNYQNQMQNPALSEQYARYMGYQLMQNASQPINVFRYGPQAVQHSQTMITPSNSSGNMSGAANIDETVSGKMG 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10819g00002 546 PANTHER TRANSCRIPTION FACTOR PIF3 20 507 IPR044273 GO:0003700|GO:0006355
Vium10819g00002 546 MobiDBLite consensus disorder prediction 264 284 - -
Vium10819g00002 546 MobiDBLite consensus disorder prediction 522 537 - -
Vium10819g00002 546 Pfam Helix-loop-helix DNA-binding domain 354 400 IPR011598 GO:0046983
Vium10819g00002 546 SMART finulus 356 405 IPR011598 GO:0046983
Vium10819g00002 546 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 428 IPR036638 GO:0046983
Vium10819g00002 546 Gene3D - 345 406 IPR036638 GO:0046983
Vium10819g00002 546 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Vium10819g00002 546 MobiDBLite consensus disorder prediction 333 347 - -
Vium10819g00002 546 MobiDBLite consensus disorder prediction 313 332 - -
Vium10819g00002 546 FunFam Basic helix-loop-helix transcription factor 345 408 - -
Vium10819g00002 546 CDD bHLH_AtPIF_like 350 413 IPR047265 -
Vium10819g00002 546 MobiDBLite consensus disorder prediction 285 312 - -
Vium10819g00002 546 MobiDBLite consensus disorder prediction 259 354 - -
Vium10819g00002 546 Coils Coil 356 376 - -
Vium10819g00002 546 MobiDBLite consensus disorder prediction 522 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10819g00002 Vium-Chr10819 562 6313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10819g00002 1 99 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 38.889 5.60e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium10819g00002 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10819g00002 K16189 - gmx:100784531 932.939