Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10817g00001 ATGCCTTCCAAGAGGCTTCAATGGAGATCCTTAATACTTGGTTGTTTTCAGGCCAAGAACCAACAACCCTTGGATGCTCCAAACATAGTTTCGAAAAAGTCTTCATCGAGTAGAATCTTCCTCTCTGATTTAAGCCTCAGCGATTATTCATCACTCTCTATCATGAGTGATTTGTCCAATTCTCTGGTGGGATCAAATCTGCGTATTTTCTCCTACCAGGAGCTCAAGGAGATCACGCACAGCTTTAGCAAATCCAACATTCTTGGGGAAGGTGGGTTTGGGAAAGTGTATAAAGGCTTCATCGATGATAATTTTAAGCGTGGGTTGAAAGCTCAGGTTGTGGCAGTTAAAGCCTTAAACTTGGATGGAAAACAGGGTCACCGAGAGTGGTTGGCTGAAGTAATCTTTCTGGGGCAGTTGAAACATCGCCATCTGGTTAACTTAATTGGCTATTGCTGCGAAGATGAGCATAGGCTTCTAGTGTATGAATACATGGAGAGGGGCAATCTGGAGGAAAAGCTTTTCAAAGGTTATGTGGCAGCTTTGCCATGGCTAACGAGAATCAAAATAGCACTTGGGGCAGCTAAGGGACTTATGTTTCTCCATGAAGAAGAAAAACCAGTCATATACAGAGATTTTAAGTCCTCAAACATCCTACTAGACGCTGATTACAATGCCAAGCTCTCAGATTTTGGTTTAGCTATAGATGGACCAGAAAAAGATCAAACACACATTACAACTCGTGTTATGGGCACGCAAGGTTATGCAGCCCCTGAGTACATCATGACAGGCCATTTGACAACCATGAGTGATGTATATAGCTTTGGAGTTGTACTGTTAGAGCTCCTCACAGGAAAGAAATCCGTGGACAAAAAACGACCCAGCAGAGAGCAGGATTTGGTGGAATGGGCAAGGCCTTTGTTGAAGGATTCCTACAAACTGGAGAGAATAATGGACCCAAGACTCGAGGATCAGTACTCAAGTGAAGGGGCTAAAAAGTTTGCAGCTTTGGCTTACCAATGTTTGAGCCACCATGCAAAGGGTAGACCCACCATGAGAACAGTGGTTCGGACCTTAGAGCCTCTCTTGAAACTGAAAGACATCCCGGTTGGCCCTTTTGTGTATGTGGTGCCCAGTGAGGAAGACAAAGACATACCCAAAATGAGTGAAAAAGTAACAGAAAATGACCATGTTGTTGAGATCAACCAAATTGATGAGTTAAAACCCAAAGAAGAAGAAAAGGCAGAGAAAAAAGAAAAGGGTCACCACCGGCAACGAAGAAGTCGTCGCCACAAACGTCGTGTTAAGCCCCTGAGGTCTCAAGCCGTTTACTCTGACACTGCTCTGTACAAAACTCTTGGCACAAATCTTTACTCTCCCAAAGAAGCACAGTGA 1395 0.4394 MPSKRLQWRSLILGCFQAKNQQPLDAPNIVSKKSSSSRIFLSDLSLSDYSSLSIMSDLSNSLVGSNLRIFSYQELKEITHSFSKSNILGEGGFGKVYKGFIDDNFKRGLKAQVVAVKALNLDGKQGHREWLAEVIFLGQLKHRHLVNLIGYCCEDEHRLLVYEYMERGNLEEKLFKGYVAALPWLTRIKIALGAAKGLMFLHEEEKPVIYRDFKSSNILLDADYNAKLSDFGLAIDGPEKDQTHITTRVMGTQGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKKSVDKKRPSREQDLVEWARPLLKDSYKLERIMDPRLEDQYSSEGAKKFAALAYQCLSHHAKGRPTMRTVVRTLEPLLKLKDIPVGPFVYVVPSEEDKDIPKMSEKVTENDHVVEINQIDELKPKEEEKAEKKEKGHHRQRRSRRHKRRVKPLRSQAVYSDTALYKTLGTNLYSPKEAQ 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10817g00001 464 CDD STKc_IRAK 88 362 - -
Vium10817g00001 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vium10817g00001 464 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 165 368 - -
Vium10817g00001 464 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10817g00001 464 Gene3D Phosphorylase Kinase; domain 1 53 164 - -
Vium10817g00001 464 Pfam Protein tyrosine and serine/threonine kinase 85 359 IPR001245 GO:0004672|GO:0006468
Vium10817g00001 464 Gene3D Transferase(Phosphotransferase) domain 1 165 368 - -
Vium10817g00001 464 PANTHER OS01G0588500 PROTEIN-RELATED 39 362 - -
Vium10817g00001 464 MobiDBLite consensus disorder prediction 420 438 - -
Vium10817g00001 464 MobiDBLite consensus disorder prediction 401 419 - -
Vium10817g00001 464 FunFam Serine/threonine-protein kinase BIK1 49 164 - -
Vium10817g00001 464 ProSitePatterns Protein kinases ATP-binding region signature. 88 117 IPR017441 GO:0005524
Vium10817g00001 464 MobiDBLite consensus disorder prediction 401 442 - -
Vium10817g00001 464 SUPERFAMILY Protein kinase-like (PK-like) 57 359 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10817g00001 Vium-Chr10817 23578 25976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10817g00001 68 399 Glycoside Hydrolase AT3G07070 48.060 6.79e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium10817g00001 PK_Tyr_Ser-Thr 3.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10817g00001 - - gmx:100790454 760.755