Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10812g00001 ATGGCTGATCTTCAGCAGGGAGATCAACCTTCTTCATCGAAAGCGATGGAAAGAAAAACTATAGAAAAAACCAGGAGAATCCATATGAAGAATCTCTGTTCCCAGCTTAGCTCTCTTCTCCCTAACAACAATAATCCCAGGGTTTGTCTGTCTCTCCTTCAAGGCATAATGGGGCTTGGAGTGTGGGAGAAGGAAATGAAAAAGGTGGAAGCATTATCACGTGTTGATCAAATAGACGAGGCTATCAACCACATCAAGAACCTGGAGACAAAGGTGAAGATGGCGGAGAAGCACAGAGAAAGTTTAAGGGAAAGGAAGAGATCTCGTAGTGGATGTTCTAGTTCTTTCGAAGCAACGAAGTTGAGGTTCATGAAATGGGTCCTTGCTACGAATCACTCTGACAACATAGAAGTCAAGACACTTCATTCCTCGCTCTCGTCTGCGACATCGTCGCTACATGTTCTCAACGCTGAGATTCAGCAATCCTATAACTTAGGAACAGCCGTTTTGATTGAGAGACTGAAAATATTTGTCAACGGACATGGGTAG 549 0.4372 MADLQQGDQPSSSKAMERKTIEKTRRIHMKNLCSQLSSLLPNNNNPRVCLSLLQGIMGLGVWEKEMKKVEALSRVDQIDEAINHIKNLETKVKMAEKHRESLRERKRSRSGCSSSFEATKLRFMKWVLATNHSDNIEVKTLHSSLSSATSSLHVLNAEIQQSYNLGTAVLIERLKIFVNGHG 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10812g00001 182 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 88 IPR011598 GO:0046983
Vium10812g00001 182 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 152 - -
Vium10812g00001 182 Pfam Helix-loop-helix DNA-binding domain 17 89 IPR011598 GO:0046983
Vium10812g00001 182 Coils Coil 78 105 - -
Vium10812g00001 182 Gene3D - 13 115 IPR036638 GO:0046983
Vium10812g00001 182 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 103 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10812g00001 Vium-Chr10812 9867 10720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10812g00001 13 108 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.458 2.80e-09 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium10812g00001 HLH 7.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10812g00001 - - vum:124820098 328.946