Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1079g00010 ATGGGTTGCTGCTTTAGTGCTCCTCCAAAGATCAAAGCCGAGAGCCCTCCACGTAATGGTTTGAATTCAAAGGATGGTAGCAAAGAAGAGATTGATCCGAGTGTTTTAAGCGGCACGGTGTCGTCTTCATCTATGCTTCTAACTCCTCAGAATGAGGTTGAGATATTGGAAGCCTGCAATTTGAAGAATTTTGCATTCAATGAGCTAAGAACTGCTACAAGGAACTTTCGTCCAGATAGTATGGTAGGTGAAGGTGGGTTTGGTAGTGTGTTTAAAGGGTGGATTGATGAGCAGACACTTGCCCCTACTAAAGCAGGCACAGGAATGGTCATTGCTGTGAAGAGGCTTAATCAAGAAAGCAACCAGGGACACATTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTCAGTCATCCTAATCTTGTGAAGCTAATTGGTTACTCCTTGGAGGATGATCACCGGATTCTGGTATATGAGTTTGTGGCCAAGGGTAGCTTGGATAATCACTTGTTTAGGAGGGCCTCTTACATTGAACCGCTCTCTTGGAACATCCGTATGAAGATTGCTCTTGATGCTGCCAAAGGGCTTGCATTTCTTCACAGTGATGAAGTAGATGTAATATTCAGGGACTTCAAAACTTCTAACATCTTACTTGATTCTAATTATAATGCAAAACTGTCTGATTTTGGGTTGGCAAAAAATGGACCAGAAGGTGACAAGAGTCATGTTTCTACAAGGGTGATGGGCACCTTTGGCTACGCTGCTCCTGAGTATATTGCAACAGGTCACTTAACGAAAAGGAGTGACATATACAGTTTTGGAGTTGTGCTTCTGGAACTTATGTCGGGAAAACGTGCACTGGACAGCAACAGGCCGAATGGAGAGCATAATCTAGTTGAATGGGCGAAACCACTTCTGATAAACAAACACAAGATCTCCCAAGTCATGGATGCACGTATAGAAGGCCAATACTCTAAGAGAGAAGCAAAGAGAATAGCTCACCTTGCAATTCAATCTTTCTTGAACTGCATTGGGTCGCTCAGTGCTGTTCTTCGTGGTAGAGTGGTTAAAGGGGGAAAACATGATCAGGGCTTAGCGATTTTTGTGGAGCTGAAGGCATCGACTTTCGAAGGAGCTCCCCGTTTTTGA 1152 0.4401 MGCCFSAPPKIKAESPPRNGLNSKDGSKEEIDPSVLSGTVSSSSMLLTPQNEVEILEACNLKNFAFNELRTATRNFRPDSMVGEGGFGSVFKGWIDEQTLAPTKAGTGMVIAVKRLNQESNQGHIEWLTEINYLGQLSHPNLVKLIGYSLEDDHRILVYEFVAKGSLDNHLFRRASYIEPLSWNIRMKIALDAAKGLAFLHSDEVDVIFRDFKTSNILLDSNYNAKLSDFGLAKNGPEGDKSHVSTRVMGTFGYAAPEYIATGHLTKRSDIYSFGVVLLELMSGKRALDSNRPNGEHNLVEWAKPLLINKHKISQVMDARIEGQYSKREAKRIAHLAIQSFLNCIGSLSAVLRGRVVKGGKHDQGLAIFVELKASTFEGAPRF 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1079g00010 383 FunFam Serine/threonine-protein kinase BIK1 42 161 - -
Vium1079g00010 383 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Vium1079g00010 383 ProSiteProfiles Protein kinase domain profile. 76 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1079g00010 383 Gene3D Transferase(Phosphotransferase) domain 1 162 344 - -
Vium1079g00010 383 SUPERFAMILY Protein kinase-like (PK-like) 52 313 IPR011009 -
Vium1079g00010 383 Pfam Protein tyrosine and serine/threonine kinase 80 312 IPR001245 GO:0004672|GO:0006468
Vium1079g00010 383 ProSitePatterns Protein kinases ATP-binding region signature. 82 114 IPR017441 GO:0005524
Vium1079g00010 383 MobiDBLite consensus disorder prediction 1 32 - -
Vium1079g00010 383 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 162 345 - -
Vium1079g00010 383 PANTHER OS01G0588500 PROTEIN-RELATED 44 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1079g00010 Vium-Chr1079 96639 117926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1079g00010 54 339 Glycoside Hydrolase AT3G07070 47.766 1.13e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium1079g00010 PK_Tyr_Ser-Thr 9.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1079g00010 - - vum:124824934 759.599