Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1079g00001 ATGGTTTTCACTTTGAGCAAAAGAGTGCTATGCTTCATCATCATCATCACTTTTACCTGTTTCTTGAAACTTGCAAAGCCTTCAAACTTGAGGGAAGACACGTTGCTCCAAGGCCATCCCCTTGCAGCAACCGACCGTTTGATTTCGCCTTCTTCTTTATACACACTGCGTTTCTTTCAGCTTGATGATGGGTCTGAAGCTAGCACCAAATTCTACCTTGGCATATCAGCCAATAAGTACTATTACTATGTTTGGCTTGCCAACAGGGACAATCCAATCCACGATGACCCCGGAGTTCTCACCATTGATGAATATGGCAACCTCAAAATTGTGTCAAGTACTACCACTGTGATGCTATATTCAGTCGAAGCAGAAAGTAACAAAAGTGTTAGAGCCTCTTTGCTTGACACAGGAAACTTTGTGCTTCATGAATTGAACTTAGATGGATCTGTGAAAAGGGTGTTATGGCAAAGCTTTGATTACCCCACAGACACTATTTTACCAGGGATGAAGCTTGGCTATGACAAGCACACTGGCCACAAGTGGTCTCTAACAGCAAGGAGAAGTTACAAAACTCTTTGGTCAGGGTCTTTCTCTCTCAGCCTTGACCCCAAAATTAACCAATTGATTTCCAGATGGAGAGGGGACATTATTTGGGCCAGTGGAGAGTGGAGAAATGGAAGTTTTAGCAACCTGAAATCCTCATCACTTGACAGAGAGAACTTCAACTTCACTTTCTTTTCAAACGAAAGTTTGACCTACTTTGAATATTCTCCAGATTCTGGTTATCTCATCATGGGACCATTGGGTATAATCAATGCTACCGGTGTCTCTTACTCCTGTGTTGGCACTGAGATTGTGCCTGGTTGTACAATGCCACAGCCTCCCAAATGTAGGGAAAATGGTGATTTGTACTTGCCAAGTTGGAATAGTTTTGGAGCAATGTCAAGAAAGGGATACATATTTGATGAAAGAGAGAACATGACCATTTCTGATTGCTGGATGAGGTGTTTGAAAAATTGCTCCTGTGAGGCTTACACTTATGCATTCAAGGATGCAACTGGCTGTGAAATATGGAGCAGATACACATCACACTTTGTTGAGGGTAATTCCGGTGTTGGCCGTCCAATTTTCTTCTTTCTCAGCGAAACCAAAGCCAAAGGCAAGAAGAGGAGAATATGGATTGCTAGTGCTGCGGTTGGAGTTCTTCTCCTCATACTCTCATTCATTGCATCCTTTATCATGTTGGGGAGAAAACAAAAACAAAGAGTTGAAAATCGTAAGAAGCGAACAAATGTATTCTCTGACATTGGAGAAAATACTGAAATTTCTGATGCATGCGATGAAGGAAGAGAAGAATGGAATGAGAAAAGGACAGGCAGTGATACACATAAATTCGACTTTATAACCATTCTTCAGGCAACGGACAATTTCTCTTTAGCGAATAAGATTGGAGAGGGTGGTTTTGGACCTGTTTACAAGGGGAAATTGGCAAATGGTCAAGAAATAGCTATAAAGAGACTTTCAAAAAGCTCGGGACAAGGATTGGTAGAGTTCAGAAACGAAGCTATGCTGATTGTGAAACTGCAGCACACTAACCTAGTGAGGCTTTTAGGATTTTGCATTGACAGAGAAGAAAGGATATTAGTCTATGAATACATGGCCAACAAAAGTTTGAATTTATACCTTTTCGGTATGAAAAATATTCTCATCTAA 1716 0.4103 MVFTLSKRVLCFIIIITFTCFLKLAKPSNLREDTLLQGHPLAATDRLISPSSLYTLRFFQLDDGSEASTKFYLGISANKYYYYVWLANRDNPIHDDPGVLTIDEYGNLKIVSSTTTVMLYSVEAESNKSVRASLLDTGNFVLHELNLDGSVKRVLWQSFDYPTDTILPGMKLGYDKHTGHKWSLTARRSYKTLWSGSFSLSLDPKINQLISRWRGDIIWASGEWRNGSFSNLKSSSLDRENFNFTFFSNESLTYFEYSPDSGYLIMGPLGIINATGVSYSCVGTEIVPGCTMPQPPKCRENGDLYLPSWNSFGAMSRKGYIFDERENMTISDCWMRCLKNCSCEAYTYAFKDATGCEIWSRYTSHFVEGNSGVGRPIFFFLSETKAKGKKRRIWIASAAVGVLLLILSFIASFIMLGRKQKQRVENRKKRTNVFSDIGENTEISDACDEGREEWNEKRTGSDTHKFDFITILQATDNFSLANKIGEGGFGPVYKGKLANGQEIAIKRLSKSSGQGLVEFRNEAMLIVKLQHTNLVRLLGFCIDREERILVYEYMANKSLNLYLFGMKNILI 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1079g00001 571 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 225 IPR036426 -
Vium1079g00001 571 SMART ntp_6 307 383 IPR003609 -
Vium1079g00001 571 Gene3D Phosphorylase Kinase; domain 1 441 553 - -
Vium1079g00001 571 ProSiteProfiles Protein kinase domain profile. 478 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1079g00001 571 SMART blect_4 38 162 IPR001480 -
Vium1079g00001 571 Pfam D-mannose binding lectin 83 188 IPR001480 -
Vium1079g00001 571 Pfam Protein tyrosine and serine/threonine kinase 480 563 IPR001245 GO:0004672|GO:0006468
Vium1079g00001 571 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 443 553 - -
Vium1079g00001 571 Pfam PAN-like domain 326 361 IPR003609 -
Vium1079g00001 571 ProSiteProfiles PAN/Apple domain profile. 298 382 IPR003609 -
Vium1079g00001 571 SUPERFAMILY Protein kinase-like (PK-like) 460 568 IPR011009 -
Vium1079g00001 571 ProSiteProfiles Bulb-type lectin domain profile. 32 155 IPR001480 -
Vium1079g00001 571 CDD B_lectin 47 162 IPR001480 -
Vium1079g00001 571 Gene3D - 28 159 IPR036426 -
Vium1079g00001 571 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1079g00001 Vium-Chr1079 38426 41072 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1079g00001 386 564 Receptor kinase-like Gene Family AT4G23190 43.575 1.24e-39 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1079g00001 B_lectin 4.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1079g00001 - - vum:124824926 1136.32